RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAT1Q14517 4588 aa8.3□□□□□ -1.08
UPF1-203ENST00000594504 TRBV25-1A0A075B6N4 114 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 A0A087WX48 190 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 FAM229AH3BQW9 127 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 S100A8P05109 93 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 RAB4AP20338 218 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 PKIAP61925 76 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 HBBP68871 147 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 LAGE3Q14657 143 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 IQCJQ1A5X6 159 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 AMN1Q8IY45 258 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 RPL39LQ96EH5 51 aaKnown RBP8.29□□□□□ -1.08
UPF1-203ENST00000594504 CHCHD5Q9BSY4 110 aa8.29□□□□□ -1.08
UPF1-203ENST00000594504 IGHV1-24A0A0C4DH33 117 aa8.28□□□□□ -1.08
UPF1-203ENST00000594504 TRBV6-5A0A0K0K1A5 114 aa8.28□□□□□ -1.08
UPF1-203ENST00000594504 A0A1B0GXF2 115 aa8.28□□□□□ -1.08
UPF1-203ENST00000594504 CAMPP49913 170 aa8.28□□□□□ -1.08
UPF1-203ENST00000594504 MRPL54Q6P161 138 aaKnown RBP8.28□□□□□ -1.08
UPF1-203ENST00000594504 ATP5L2Q7Z4Y8 100 aa8.28□□□□□ -1.08
UPF1-203ENST00000594504 NTN5Q8WTR8 489 aaPredicted RBP8.28□□□□□ -1.08
UPF1-203ENST00000594504 SDHAF1A6NFY7 115 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 TMEM262E9PQX1 116 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 COTL1Q14019 142 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 ELOBQ15370 118 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 FAM104BQ5XKR9 115 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 TMEM70Q9BUB7 260 aa8.27□□□□□ -1.09
UPF1-203ENST00000594504 TRAV8-3A0A0A6YYJ7 113 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 LECT2O14960 151 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 GAS8-AS1O95177 125 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 PPP1R17O96001 155 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 C10orf91Q5T1B1 145 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 TMEM243Q9BU79 118 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 CTDSP1Q9GZU7 261 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 ST20Q9HBF5 79 aa8.26□□□□□ -1.09
UPF1-203ENST00000594504 HERC1Q15751 4861 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 NCR2O95944 276 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 AMTP48728 403 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 MRPL51Q4U2R6 128 aaKnown RBP8.25□□□□□ -1.09
UPF1-203ENST00000594504 MPV17L2Q567V2 206 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 IMMP2LQ96T52 175 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 KLK12Q9UKR0 248 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 CARHSP1Q9Y2V2 147 aaKnown RBP8.25□□□□□ -1.09
UPF1-203ENST00000594504 VPS13BQ7Z7G8 4022 aa8.25□□□□□ -1.09
UPF1-203ENST00000594504 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.24□□□□□ -1.09
UPF1-203ENST00000594504 SMKR1H3BMG3 65 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 I3L3M4 83 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 RPS10P46783 165 aaKnown RBP8.24□□□□□ -1.09
UPF1-203ENST00000594504 GAGE6Q13070 117 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 LINC01620Q4KN68 170 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 BTF3L4Q96K17 158 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 TM2D2Q9BX73 214 aa8.24□□□□□ -1.09
UPF1-203ENST00000594504 PMCHP20382 165 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 POLR2KP53803 58 aaKnown RBP8.23□□□□□ -1.09
UPF1-203ENST00000594504 RBX1P62877 108 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 ATRAIDQ6UW56 229 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 NRACQ8N912 160 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 DEFB104AQ8WTQ1 72 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 BAALCQ8WXS3 180 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 UBE2WQ96B02 151 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 RMI2Q96E14 147 aa8.23□□□□□ -1.09
UPF1-203ENST00000594504 TRBV27A0A0K0K1C4 114 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 UBE2L6O14933 153 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 APCSP02743 223 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 PPBPP02775 128 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 ANGP03950 147 aaKnown RBP8.22□□□□□ -1.09
UPF1-203ENST00000594504 CKS2P33552 79 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 SUMO2P61956 95 aaKnown RBP8.22□□□□□ -1.09
UPF1-203ENST00000594504 Q0VG73 95 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 RHEBQ15382 184 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 Q8N976 141 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 TMEM242Q9NWH2 141 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 COX11Q9Y6N1 276 aa8.22□□□□□ -1.09
UPF1-203ENST00000594504 DNAH8Q96JB1 4490 aa8.21□□□□□ -1.09
UPF1-203ENST00000594504 TRBV24-1A0A075B6N3 115 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 TRAV9-1A0A075B6T8 112 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 A0A1B0GUV1 79 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 J3QL48 77 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 VCYO14598 125 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 CRPP02741 224 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 CLRN3Q8NCR9 226 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 C20orf78Q9BR46 151 aa8.21□□□□□ -1.1
UPF1-203ENST00000594504 C7orf77A4D0Y5 90 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 D6R8Y8 96 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 H7C423 109 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 PHOX2AO14813 284 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 TSHBP01222 138 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 S100PP25815 95 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 RPL32P62910 135 aaKnown RBP8.2□□□□□ -1.1
UPF1-203ENST00000594504 NDUFA5Q16718 116 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 ENHOQ6UWT2 76 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 Q6ZSA8 131 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 LINC00528Q8N1L1 170 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 PRR34Q9NV39 138 aa8.2□□□□□ -1.1
UPF1-203ENST00000594504 IGKV2D-24A0A075B6R9 120 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 TNFRSF6BO95407 300 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 MIAQ16674 131 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 ORMDL3Q8N138 153 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 LINC00269Q8N2A0 174 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 KIR2DL4Q99706 377 aa8.19□□□□□ -1.1
UPF1-203ENST00000594504 RPS10P5Q9NQ39 176 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms