RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TRAV26-1A0A087WT03 109 aa21.42■■□□□ 1.02
CTCF-203ENST00000566078 HBDP02042 147 aa21.42■■□□□ 1.02
CTCF-203ENST00000566078 VSIG2Q96IQ7 327 aa21.42■■□□□ 1.02
CTCF-203ENST00000566078 NUDT3O95989 172 aa21.41■■□□□ 1.02
CTCF-203ENST00000566078 LINC00694P0DN24 101 aa21.41■■□□□ 1.02
CTCF-203ENST00000566078 PACRGQ96M98 296 aaPredicted RBP21.4■■□□□ 1.02
CTCF-203ENST00000566078 DAZ4Q86SG3 579 aaKnown RBP21.4■■□□□ 1.02
CTCF-203ENST00000566078 DAZ3Q9NR90 486 aaKnown RBP21.4■■□□□ 1.02
CTCF-203ENST00000566078 BTF3P20290 206 aaKnown RBP21.39■■□□□ 1.01
CTCF-203ENST00000566078 COTL1Q14019 142 aa21.38■■□□□ 1.01
CTCF-203ENST00000566078 OR10D4PQ8NGN7 298 aa21.37■■□□□ 1.01
CTCF-203ENST00000566078 LEPROTL1O95214 131 aa21.36■■□□□ 1.01
CTCF-203ENST00000566078 DEFB131BA0A096LNP1 70 aa21.35■■□□□ 1.01
CTCF-203ENST00000566078 AKR1D1P51857 326 aa21.35■■□□□ 1.01
CTCF-203ENST00000566078 STAB2Q8WWQ8 2551 aa21.34■■□□□ 1.01
CTCF-203ENST00000566078 C2orf66Q6UXQ4 117 aa21.33■■□□□ 1
CTCF-203ENST00000566078 LINC00173Q6ZV60 143 aa21.33■■□□□ 1
CTCF-203ENST00000566078 ATP6V0E2Q8NHE4 81 aa21.32■■□□□ 1
CTCF-203ENST00000566078 A0A096LPF7 62 aa21.3■■□□□ 1
CTCF-203ENST00000566078 TRAV10A0A0B4J240 114 aa21.3■■□□□ 1
CTCF-203ENST00000566078 TOMM6Q96B49 74 aa21.3■■□□□ 1
CTCF-203ENST00000566078 HSPB8Q9UJY1 196 aa21.3■■□□□ 1
CTCF-203ENST00000566078 CYSLTR1Q9Y271 337 aa21.3■■□□□ 1
CTCF-203ENST00000566078 ICOSQ9Y6W8 199 aa21.3■■□□□ 1
CTCF-203ENST00000566078 G0S2P27469 103 aa21.29■■□□□ 1
CTCF-203ENST00000566078 CHCHD7Q9BUK0 85 aa21.29■■□□□ 1
CTCF-203ENST00000566078 RPL39P62891 51 aaKnown RBP21.29■■□□□ 1
CTCF-203ENST00000566078 NTM-AS1Q6ZSK4 140 aa21.29■■□□□ 1
CTCF-203ENST00000566078 C20orf203Q8NBC4 194 aa21.29■■□□□ 1
CTCF-203ENST00000566078 MRPL23Q16540 153 aaKnown RBP21.28■■□□□ 1
CTCF-203ENST00000566078 GTSF1LQ9H1H1 148 aa21.28■■□□□ 1
CTCF-203ENST00000566078 H3BNG1 76 aa21.26■□□□□ 0.99
CTCF-203ENST00000566078 KRTDAPP60985 99 aa21.26■□□□□ 0.99
CTCF-203ENST00000566078 SCGB3A1Q96QR1 104 aa21.24■□□□□ 0.99
CTCF-203ENST00000566078 IGKV2D-29A0A075B6S2 120 aaPredicted RBP21.23■□□□□ 0.99
CTCF-203ENST00000566078 IGKV2-29A2NJV5 120 aaPredicted RBP21.23■□□□□ 0.99
CTCF-203ENST00000566078 C3orf79P0CE67 100 aa21.23■□□□□ 0.99
CTCF-203ENST00000566078 TMEM97Q5BJF2 176 aa21.23■□□□□ 0.99
CTCF-203ENST00000566078 LINC01549A6NIU2 74 aa21.22■□□□□ 0.99
CTCF-203ENST00000566078 SH2D6Q7Z4S9 175 aa21.22■□□□□ 0.99
CTCF-203ENST00000566078 IFI27L1Q96BM0 104 aa21.22■□□□□ 0.99
CTCF-203ENST00000566078 TRBV25-1A0A075B6N4 114 aa21.22■□□□□ 0.99
CTCF-203ENST00000566078 MAP1LC3CQ9BXW4 147 aa21.22■□□□□ 0.99
CTCF-203ENST00000566078 TRBV6-8A0A0A6YYG3 113 aa21.21■□□□□ 0.99
CTCF-203ENST00000566078 ATP5LO75964 103 aa21.21■□□□□ 0.99
CTCF-203ENST00000566078 TMEM243Q9BU79 118 aa21.2■□□□□ 0.98
CTCF-203ENST00000566078 ERASQ7Z444 233 aa21.19■□□□□ 0.98
CTCF-203ENST00000566078 H0Y8G0 127 aa21.18■□□□□ 0.98
CTCF-203ENST00000566078 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP21.18■□□□□ 0.98
CTCF-203ENST00000566078 FBN3Q75N90 2809 aa21.18■□□□□ 0.98
CTCF-203ENST00000566078 IGIPA6NJ69 53 aa21.17■□□□□ 0.98
CTCF-203ENST00000566078 SYS1-DBNDD2H3BUS1 97 aa21.16■□□□□ 0.98
CTCF-203ENST00000566078 TIMM17AQ99595 171 aa21.16■□□□□ 0.98
CTCF-203ENST00000566078 UBE2L6O14933 153 aa21.15■□□□□ 0.98
CTCF-203ENST00000566078 Q6ZN92 141 aa21.15■□□□□ 0.98
CTCF-203ENST00000566078 TMEM141Q96I45 108 aa21.15■□□□□ 0.98
CTCF-203ENST00000566078 UBE2D4Q9Y2X8 147 aa21.15■□□□□ 0.98
CTCF-203ENST00000566078 CHCHD5Q9BSY4 110 aa21.14■□□□□ 0.97
CTCF-203ENST00000566078 DNAH7Q8WXX0 4024 aa21.13■□□□□ 0.97
CTCF-203ENST00000566078 CEMP1Q6PRD7 247 aaPredicted RBP21.13■□□□□ 0.97
CTCF-203ENST00000566078 SPATA12Q7Z6I5 190 aa21.13■□□□□ 0.97
CTCF-203ENST00000566078 SPANXA1Q9NS26 97 aa21.12■□□□□ 0.97
CTCF-203ENST00000566078 PYGO1Q9Y3Y4 419 aa21.12■□□□□ 0.97
CTCF-203ENST00000566078 SCGB1D1O95968 90 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 PRSS1P07477 247 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 JOSD1Q15040 202 aaPredicted RBP21.11■□□□□ 0.97
CTCF-203ENST00000566078 PYY3Q5JQD4 70 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 FGF6P10767 208 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 GAGE6Q13070 117 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 PET117Q6UWS5 81 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 C15orf53Q8NAA6 179 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 BAALCQ8WXS3 180 aa21.11■□□□□ 0.97
CTCF-203ENST00000566078 IGLL5B9A064 214 aa21.1■□□□□ 0.97
CTCF-203ENST00000566078 H7C423 109 aa21.1■□□□□ 0.97
CTCF-203ENST00000566078 LYPD5Q6UWN5 251 aa21.1■□□□□ 0.97
CTCF-203ENST00000566078 OPRPNQ99935 248 aaPredicted RBP21.1■□□□□ 0.97
CTCF-203ENST00000566078 Q8N976 141 aa21.09■□□□□ 0.97
CTCF-203ENST00000566078 TIMM21Q9BVV7 248 aa21.09■□□□□ 0.97
CTCF-203ENST00000566078 IGLV4-3A0A075B6K6 122 aa21.08■□□□□ 0.97
CTCF-203ENST00000566078 SMAGPQ0VAQ4 97 aa21.07■□□□□ 0.96
CTCF-203ENST00000566078 LELP1Q5T871 98 aa21.07■□□□□ 0.96
CTCF-203ENST00000566078 AMMECR1LQ6DCA0 310 aa21.07■□□□□ 0.96
CTCF-203ENST00000566078 MRPL52Q86TS9 123 aaKnown RBP21.07■□□□□ 0.96
CTCF-203ENST00000566078 DGAT2L7PQ6IED9 249 aa21.07■□□□□ 0.96
CTCF-203ENST00000566078 DYNC2H1Q8NCM8 4307 aaKnown RBP21.06■□□□□ 0.96
CTCF-203ENST00000566078 TIRAPP58753 221 aa21.06■□□□□ 0.96
CTCF-203ENST00000566078 C20orf202A1L168 122 aa21.05■□□□□ 0.96
CTCF-203ENST00000566078 SMIM6P0DI80 62 aa21.05■□□□□ 0.96
CTCF-203ENST00000566078 FAM104AQ969W3 186 aa21.05■□□□□ 0.96
CTCF-203ENST00000566078 NPSP0C0P6 89 aa21.04■□□□□ 0.96
CTCF-203ENST00000566078 ZC2HC1BQ5TFG8 222 aa21.04■□□□□ 0.96
CTCF-203ENST00000566078 LINC01545Q5VT33 79 aa21.04■□□□□ 0.96
CTCF-203ENST00000566078 Q6ZUT4 128 aa21.04■□□□□ 0.96
CTCF-203ENST00000566078 PMCHL2Q9BQD1 86 aa21.04■□□□□ 0.96
CTCF-203ENST00000566078 TRAV12-1A0A0B4J245 112 aa21.03■□□□□ 0.96
CTCF-203ENST00000566078 RNASE13Q5GAN3 156 aaKnown RBP21.03■□□□□ 0.96
CTCF-203ENST00000566078 LGALS9CQ6DKI2 356 aa21.03■□□□□ 0.96
CTCF-203ENST00000566078 OR5A1Q8NGJ0 315 aa21.03■□□□□ 0.96
CTCF-203ENST00000566078 TMEM101Q96IK0 257 aa21.03■□□□□ 0.96
CTCF-203ENST00000566078 CSDC2Q9Y534 153 aaKnown RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms