RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CNFNQ9BYD5 112 aa11.45□□□□□ -0.58
HDDC3-205ENST00000559898 A0A1B0GVG6 124 aa11.44□□□□□ -0.58
HDDC3-205ENST00000559898 H7C1H1 209 aa11.44□□□□□ -0.58
HDDC3-205ENST00000559898 LYPD6BQ8NI32 183 aa11.44□□□□□ -0.58
HDDC3-205ENST00000559898 TMEM243Q9BU79 118 aa11.44□□□□□ -0.58
HDDC3-205ENST00000559898 FAT3Q8TDW7 4589 aa11.43□□□□□ -0.58
HDDC3-205ENST00000559898 CEBPGP53567 150 aa11.43□□□□□ -0.58
HDDC3-205ENST00000559898 WDR73Q6P4I2 378 aa11.43□□□□□ -0.58
HDDC3-205ENST00000559898 BIN3Q9NQY0 253 aa11.43□□□□□ -0.58
HDDC3-205ENST00000559898 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.43□□□□□ -0.58
HDDC3-205ENST00000559898 SLPIP03973 132 aa11.42□□□□□ -0.58
HDDC3-205ENST00000559898 PKIAP61925 76 aa11.42□□□□□ -0.58
HDDC3-205ENST00000559898 PGLYRP4Q96LB8 373 aa11.42□□□□□ -0.58
HDDC3-205ENST00000559898 GATCO43716 136 aaKnown RBP11.41□□□□□ -0.58
HDDC3-205ENST00000559898 PLA2G1BP04054 148 aaKnown RBP11.41□□□□□ -0.58
HDDC3-205ENST00000559898 C14orf177Q52M58 125 aa11.41□□□□□ -0.58
HDDC3-205ENST00000559898 TAGLN2P37802 199 aaKnown RBP11.4□□□□□ -0.58
HDDC3-205ENST00000559898 AMTP48728 403 aa11.4□□□□□ -0.58
HDDC3-205ENST00000559898 A0A1B0GUV1 79 aa11.39□□□□□ -0.59
HDDC3-205ENST00000559898 TMEM250H0YL14 139 aa11.39□□□□□ -0.59
HDDC3-205ENST00000559898 HNRNPA3P51991 378 aaKnown RBP11.39□□□□□ -0.59
HDDC3-205ENST00000559898 BLOC1S1P78537 153 aa11.39□□□□□ -0.59
HDDC3-205ENST00000559898 C9orf163Q8N9P6 203 aa11.39□□□□□ -0.59
HDDC3-205ENST00000559898 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-205ENST00000559898 IGKV3OR2-268A0A0C4DH90 116 aa11.38□□□□□ -0.59
HDDC3-205ENST00000559898 IGKV2-29A2NJV5 120 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-205ENST00000559898 COTL1Q14019 142 aa11.38□□□□□ -0.59
HDDC3-205ENST00000559898 SDIM1Q6ZPB5 146 aa11.37□□□□□ -0.59
HDDC3-205ENST00000559898 FAM231DQ6ZW35 169 aa11.37□□□□□ -0.59
HDDC3-205ENST00000559898 SRP19P09132 144 aaKnown RBP11.36□□□□□ -0.59
HDDC3-205ENST00000559898 DGAT2L7PQ6IED9 249 aa11.36□□□□□ -0.59
HDDC3-205ENST00000559898 hDV102S1A0JD36 115 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 FAM231BA6NCW3 169 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 J3QL48 77 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 UBE2L6O14933 153 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 LINC01551Q86U37 167 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 C15orf56Q8N910 161 aa11.35□□□□□ -0.59
HDDC3-205ENST00000559898 GAGE12HA6NDE8 117 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 SDHAF1A6NFY7 115 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 KRTAP29-1A8MX34 341 aaPredicted RBP11.34□□□□□ -0.59
HDDC3-205ENST00000559898 CHTF8P0CG12 524 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 RPS10P46783 165 aaKnown RBP11.34□□□□□ -0.59
HDDC3-205ENST00000559898 RNF185Q96GF1 192 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 FAM210AQ96ND0 272 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 SMIM7Q9BQ49 75 aa11.34□□□□□ -0.59
HDDC3-205ENST00000559898 EIF5A2Q9GZV4 153 aaKnown RBP11.34□□□□□ -0.59
HDDC3-205ENST00000559898 TRAV8-4A0A0B4J246 113 aa11.33□□□□□ -0.6
HDDC3-205ENST00000559898 A8MWL6 223 aa11.33□□□□□ -0.6
HDDC3-205ENST00000559898 C9JQL5 133 aa11.33□□□□□ -0.6
HDDC3-205ENST00000559898 CNBPP62633 177 aaKnown RBP11.32□□□□□ -0.6
HDDC3-205ENST00000559898 ZNF727A8MUV8 499 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 HIGD1CA8MV81 97 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 SMKR1H3BMG3 65 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 TSHBP01222 138 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 FGF6P10767 208 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 SRSF3P84103 164 aaKnown RBP11.31□□□□□ -0.6
HDDC3-205ENST00000559898 HIGD2BQ4VC39 106 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 CLRN3Q8NCR9 226 aa11.31□□□□□ -0.6
HDDC3-205ENST00000559898 APCSP02743 223 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 RPL37AP61513 92 aaKnown RBP11.3□□□□□ -0.6
HDDC3-205ENST00000559898 CT83Q5H943 113 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 RNASEKQ6P5S7 137 aaKnown RBP11.3□□□□□ -0.6
HDDC3-205ENST00000559898 AMN1Q8IY45 258 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 TSKUQ8WUA8 353 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 TMEM242Q9NWH2 141 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 V9GYV3 84 aa11.3□□□□□ -0.6
HDDC3-205ENST00000559898 TRBV6-5A0A0K0K1A5 114 aa11.29□□□□□ -0.6
HDDC3-205ENST00000559898 NCR2O95944 276 aa11.29□□□□□ -0.6
HDDC3-205ENST00000559898 RAB4AP20338 218 aa11.29□□□□□ -0.6
HDDC3-205ENST00000559898 SMIM15Q7Z3B0 74 aa11.29□□□□□ -0.6
HDDC3-205ENST00000559898 CHCHD10Q8WYQ3 142 aaPredicted RBP11.29□□□□□ -0.6
HDDC3-205ENST00000559898 ESDP10768 282 aa11.28□□□□□ -0.6
HDDC3-205ENST00000559898 PMCHP20382 165 aa11.28□□□□□ -0.6
HDDC3-205ENST00000559898 CIRBPQ14011 172 aaKnown RBP11.28□□□□□ -0.6
HDDC3-205ENST00000559898 AMMECR1LQ6DCA0 310 aa11.28□□□□□ -0.6
HDDC3-205ENST00000559898 OSTCQ9NRP0 149 aa11.28□□□□□ -0.6
HDDC3-205ENST00000559898 A0A1B0GUT8 65 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 I3L3M4 83 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 FOXI1Q12951 378 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 NUP35Q8NFH5 326 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 ISOC2Q96AB3 205 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 TMEM191AQ9H0A3 160 aa11.27□□□□□ -0.61
HDDC3-205ENST00000559898 POLR2KP53803 58 aaKnown RBP11.26□□□□□ -0.61
HDDC3-205ENST00000559898 RPL23P62829 140 aaKnown RBP11.26□□□□□ -0.61
HDDC3-205ENST00000559898 LINC00526Q96FQ7 95 aa11.26□□□□□ -0.61
HDDC3-205ENST00000559898 ST20Q9HBF5 79 aa11.26□□□□□ -0.61
HDDC3-205ENST00000559898 IGHV3-64A0A075B6Q5 118 aa11.25□□□□□ -0.61
HDDC3-205ENST00000559898 A0A087WYN8 130 aa11.25□□□□□ -0.61
HDDC3-205ENST00000559898 COX6A2Q02221 97 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 TEX261Q6UWH6 196 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 NRACQ8N912 160 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 PRSS3P2Q8NHM4 247 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 SPACA4Q8TDM5 124 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 BORCS7Q96B45 105 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 AP5S1Q9NUS5 200 aa11.24□□□□□ -0.61
HDDC3-205ENST00000559898 LINC00959A0A1B0GUT2 108 aa11.23□□□□□ -0.61
HDDC3-205ENST00000559898 H7C423 109 aa11.23□□□□□ -0.61
HDDC3-205ENST00000559898 NDUFS6O75380 124 aaKnown RBP11.23□□□□□ -0.61
HDDC3-205ENST00000559898 XCL1P47992 114 aa11.23□□□□□ -0.61
HDDC3-205ENST00000559898 OR5A1Q8NGJ0 315 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms