RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 EP300Q09472 2414 aaPredicted RBP5.36□□□□□ -1.55
USP3-210ENST00000559192 H3BQ85 93 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 IGHV3-30-3P0DP02 117 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 CLPSL2Q6UWE3 100 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 FAM19A5Q7Z5A7 132 aaPredicted RBP5.36□□□□□ -1.55
USP3-210ENST00000559192 A0A0J9YXY3 114 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 B4DSR2 109 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 IGHV3-30P01768 117 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 IGHV3-30-5P0DP03 117 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 CHD7Q9P2D1 2997 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 TMEM256-PLSCR3K7ERE1 68 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 MED14OSP0DP75 135 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 XCL1P47992 114 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 Q8NA96 180 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 UBE2BP63146 152 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 RPL18AQ02543 176 aaKnown RBP5.36□□□□□ -1.55
USP3-210ENST00000559192 UBE2DNLQ8IWF7 75 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 ZMAT4Q9H898 229 aa5.36□□□□□ -1.55
USP3-210ENST00000559192 CSDC2Q9Y534 153 aaKnown RBP5.36□□□□□ -1.55
USP3-210ENST00000559192 USP17L23D6RBM5 183 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 K7ERS5 55 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 DAZ2Q13117 558 aaKnown RBP5.35□□□□□ -1.55
USP3-210ENST00000559192 ATP5EP2Q5VTU8 51 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 DAZ4Q86SG3 579 aaKnown RBP5.35□□□□□ -1.55
USP3-210ENST00000559192 APRG1Q8IVJ8 170 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 DAZ3Q9NR90 486 aaKnown RBP5.35□□□□□ -1.55
USP3-210ENST00000559192 SHISA2Q6UWI4 295 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 TMEM223A0PJW6 202 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 BPY2O14599 106 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 IMUPQ9GZP8 106 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 PLCE1Q9P212 2302 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 IGHV4OR15-8A0A075B7B6 117 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 A0A087WW49 117 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 TRIAP1O43715 76 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 IGHV4-59P01825 116 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 PDE6GP18545 87 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 ADORA2A-AS1P86434 159 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 C5orf38Q86SI9 138 aa5.35□□□□□ -1.55
USP3-210ENST00000559192 ZFAND2AQ8N6M9 145 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 C20orf203Q8NBC4 194 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 ETDCA0A1B0GVM5 59 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 A8MZ25 164 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 ANGP03950 147 aaKnown RBP5.34□□□□□ -1.55
USP3-210ENST00000559192 GVINP1Q7Z2Y8 2422 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 NAV3Q8IVL0 2385 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 H3BUA1 57 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 TNFRSF13BO14836 293 aaPredicted RBP5.34□□□□□ -1.55
USP3-210ENST00000559192 LINC01619G3V211 115 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 PRR15LQ9BU68 103 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 VPREB3Q9UKI3 123 aa5.34□□□□□ -1.55
USP3-210ENST00000559192 DSCAML1Q8TD84 2053 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 IGHV1-58A0A0C4DH39 117 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 IGHV4-61A0A0C4DH41 118 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 VPREB1P12018 145 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 ZNF22P17026 224 aaPredicted RBP5.34□□□□□ -1.56
USP3-210ENST00000559192 NSUN5P1Q3KNT7 163 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 SCXQ7RTU7 201 aa5.34□□□□□ -1.56
USP3-210ENST00000559192 CNOT1A5YKK6 2376 aaKnown RBP5.33□□□□□ -1.56
USP3-210ENST00000559192 SLURP1P55000 103 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 CNFNQ9BYD5 112 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 IGKV4-1P06312 121 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 DSCAMO60469 2012 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 F8W735 103 aaPredicted RBP5.33□□□□□ -1.56
USP3-210ENST00000559192 IGHV3-33P01772 117 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 RNASE3P12724 160 aaKnown RBP5.33□□□□□ -1.56
USP3-210ENST00000559192 MIAQ16674 131 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 SOSTDC1Q6X4U4 206 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 LAMA2P24043 3122 aaKnown RBP5.33□□□□□ -1.56
USP3-210ENST00000559192 PCSK5Q92824 1860 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 PCNX2A6NKB5 2137 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 TRBV27A0A0K0K1C4 114 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 COX7A2LO14548 114 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 UBE2AP49459 152 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 CRIP2P52943 208 aaPredicted RBP5.33□□□□□ -1.56
USP3-210ENST00000559192 DEFB112Q30KQ8 113 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 PCNX1Q96RV3 2341 aa5.33□□□□□ -1.56
USP3-210ENST00000559192 UNC80Q8N2C7 3258 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 CACNA1GO43497 2377 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 CDH23Q9H251 3354 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 NCR3O14931 201 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 PROK1P58294 105 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 TSPEAR-AS2P59090 65 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 PRR4Q16378 134 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 LINC01356Q8N9X3 169 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 ZGRF1Q86YA3 2104 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 IGLV2-18A0A075B6J9 118 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 IGF2-ASQ6U949 168 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 IGLV4-3A0A075B6K6 122 aa5.32□□□□□ -1.56
USP3-210ENST00000559192 TMEM263Q8WUH6 116 aaKnown RBP5.31□□□□□ -1.56
USP3-210ENST00000559192 NACAE9PAV3 2078 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 IGLV4-69A0A075B6H9 119 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 A0A096LPF7 62 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 RNF223E7ERA6 249 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 H0Y9J4 135 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 PIK3CD-AS1Q5SR53 167 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 Q8N6K4 173 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 NOP10Q9NPE3 64 aaKnown RBP5.31□□□□□ -1.56
USP3-210ENST00000559192 PPDPFQ9H3Y8 114 aa5.31□□□□□ -1.56
USP3-210ENST00000559192 A0A0J9YX75 114 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms