RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 RPL35AP18077 110 aaKnown RBP7.71□□□□□ -1.18
CUX1-217ENST00000558836 ZNRF2Q8NHG8 242 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 ZNF418Q8TF45 676 aaPredicted RBP7.71□□□□□ -1.18
CUX1-217ENST00000558836 I3L3M4 83 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 IGHV3-53P01767 116 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 ZNF415Q09FC8 603 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 PMVKQ15126 192 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 TMEM170BQ5T4T1 132 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 C1orf158Q8N1D5 194 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 TNFRSF18Q9Y5U5 241 aa7.71□□□□□ -1.18
CUX1-217ENST00000558836 IGHV3-64A0A075B6Q5 118 aa7.7□□□□□ -1.18
CUX1-217ENST00000558836 A0A1B0GV72 72 aa7.7□□□□□ -1.18
CUX1-217ENST00000558836 A6NDN8 102 aa7.7□□□□□ -1.18
CUX1-217ENST00000558836 RPL32P62910 135 aaKnown RBP7.7□□□□□ -1.18
CUX1-217ENST00000558836 LY6G6DO95868 133 aa7.7□□□□□ -1.18
CUX1-217ENST00000558836 VCX2Q9H322 139 aa7.7□□□□□ -1.18
CUX1-217ENST00000558836 NHP2Q9NX24 153 aaKnown RBP7.7□□□□□ -1.18
CUX1-217ENST00000558836 TRGV1A0A0A0MS02 117 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 HILS1P60008 231 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 PLEKHB2Q96CS7 222 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 GAGE12BA1L429 117 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 C20orf203Q8NBC4 194 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 HIST1H4GQ99525 98 aa7.69□□□□□ -1.18
CUX1-217ENST00000558836 MYMXA0A1B0GTQ4 84 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 ZNF815PA8K554 130 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 ADARB2-AS1A8MUL3 147 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 A8MWV9 139 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 KRTAP10-3P60369 221 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 UFSP1Q6NVU6 142 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 TIMM17AQ99595 171 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 C16orf95Q9H693 158 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 HIGD1BQ9P298 99 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.68□□□□□ -1.18
CUX1-217ENST00000558836 IGKV2-29A2NJV5 120 aaPredicted RBP7.68□□□□□ -1.18
CUX1-217ENST00000558836 Q6ZTI0 123 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 CEND1Q8N111 149 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 TMEM141Q96I45 108 aa7.68□□□□□ -1.18
CUX1-217ENST00000558836 INAFM1C9JVW0 142 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 E9PLD3 99 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 H3BRM9 83 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 TSPEAR-AS2P59090 65 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 SCGB1D4Q6XE38 83 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 TRAV25A0A0B4J276 109 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 A0A0J9YXV3 536 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 C9orf118A6NHY6 69 aa7.67□□□□□ -1.18
CUX1-217ENST00000558836 GIG44P09565 113 aaPredicted RBP7.66□□□□□ -1.18
CUX1-217ENST00000558836 SMIM13P0DJ93 91 aa7.66□□□□□ -1.18
CUX1-217ENST00000558836 SPATA3Q8NHX4 192 aa7.66□□□□□ -1.18
CUX1-217ENST00000558836 NOP10Q9NPE3 64 aaKnown RBP7.66□□□□□ -1.18
CUX1-217ENST00000558836 IGLV4-3A0A075B6K6 122 aa7.66□□□□□ -1.18
CUX1-217ENST00000558836 RHOHQ15669 191 aa7.66□□□□□ -1.18
CUX1-217ENST00000558836 GAGE10A6NGK3 116 aa7.65□□□□□ -1.18
CUX1-217ENST00000558836 FAM110AQ9BQ89 295 aa7.65□□□□□ -1.18
CUX1-217ENST00000558836 IGLV1-51P01701 117 aa7.65□□□□□ -1.18
CUX1-217ENST00000558836 FAM104AQ969W3 186 aa7.65□□□□□ -1.18
CUX1-217ENST00000558836 LINC00467Q9BRT7 94 aa7.64□□□□□ -1.19
CUX1-217ENST00000558836 TM2D2Q9BX73 214 aa7.64□□□□□ -1.19
CUX1-217ENST00000558836 SRSF9Q13242 221 aaKnown RBP eCLIP7.64□□□□□ -1.19
CUX1-217ENST00000558836 C19orf73Q9NVV2 129 aa7.64□□□□□ -1.19
CUX1-217ENST00000558836 F8P00451 2351 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 BEAN1Q3B7T3 259 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 CHCHD7Q9BUK0 85 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 TRBV7-3A0A075B6L6 115 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 RS1O15537 224 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 PF4P02776 101 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 SAMD5Q5TGI4 173 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 SFTA2Q6UW10 78 aa7.63□□□□□ -1.19
CUX1-217ENST00000558836 A0A1W2PPM0 123 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 GAGE7O76087 117 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 GAGE12FP0CL80 117 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 GAGE12GP0CL81 117 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 GAGE12IP0CL82 117 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 HERVK_113P61574 105 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 A8MZ25 164 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 C12orf74Q32Q52 190 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 GEMIN7Q9H840 131 aaKnown RBP7.62□□□□□ -1.19
CUX1-217ENST00000558836 TRAV8-3A0A0A6YYJ7 113 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 LINC01549A6NIU2 74 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 ZNF22P17026 224 aaPredicted RBP7.62□□□□□ -1.19
CUX1-217ENST00000558836 PAPPA-AS1Q5QFB9 102 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 SPCS1Q9Y6A9 102 aa7.62□□□□□ -1.19
CUX1-217ENST00000558836 J3QQQ9 107 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 M0QXV9 152 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 RHODO00212 210 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 Q6ZUT4 128 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 GAGE12JA6NER3 117 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 NDUFA7O95182 113 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 GAGE4Q13068 117 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 GAGE5Q13069 117 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 GAGE13Q4V321 117 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 SLC25A29Q8N8R3 303 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 TMEM263Q8WUH6 116 aaKnown RBP7.61□□□□□ -1.19
CUX1-217ENST00000558836 UBE2D4Q9Y2X8 147 aa7.61□□□□□ -1.19
CUX1-217ENST00000558836 TRGV2A0A075B6R0 118 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 A0A0J9YY99 117 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 LOC100131303A0A0U1RQF7 123 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 TMEM223A0PJW6 202 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 LINC00694P0DN24 101 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 FABP2P12104 132 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 LGALS3P17931 250 aaKnown RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 212.3 ms