RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 OR5A1Q8NGJ0 315 aa12.6□□□□□ -0.39
SHOX-204ENST00000554971 RBMY1BA6NDE4 496 aaKnown RBP12.59□□□□□ -0.39
SHOX-204ENST00000554971 RBMY1EA6NEQ0 496 aaKnown RBP12.59□□□□□ -0.39
SHOX-204ENST00000554971 SDHAF1A6NFY7 115 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 K7EP34 96 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 M0QY20 66 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 RBMY1DP0C7P1 496 aaKnown RBP12.59□□□□□ -0.39
SHOX-204ENST00000554971 PMVKQ15126 192 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 PTH2Q96A98 100 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 MDFICQ9P1T7 246 aa12.59□□□□□ -0.39
SHOX-204ENST00000554971 H3BUT2 72 aa12.58□□□□□ -0.39
SHOX-204ENST00000554971 SPINK13Q1W4C9 94 aa12.58□□□□□ -0.39
SHOX-204ENST00000554971 MAPKAPK5-AS1Q8N8E1 139 aa12.58□□□□□ -0.39
SHOX-204ENST00000554971 A0A087WWL8 130 aa12.58□□□□□ -0.4
SHOX-204ENST00000554971 A0A1W2PPM0 123 aa12.58□□□□□ -0.4
SHOX-204ENST00000554971 GAGE12BA1L429 117 aa12.58□□□□□ -0.4
SHOX-204ENST00000554971 JPT2Q9H910 190 aa12.58□□□□□ -0.4
SHOX-204ENST00000554971 TP53TG1Q9Y2A0 90 aa12.58□□□□□ -0.4
SHOX-204ENST00000554971 TRAV12-2A0A075B6T6 113 aa12.57□□□□□ -0.4
SHOX-204ENST00000554971 FABP2P12104 132 aa12.57□□□□□ -0.4
SHOX-204ENST00000554971 TTTY13Q9BZ97 58 aa12.57□□□□□ -0.4
SHOX-204ENST00000554971 DNAH7Q8WXX0 4024 aa12.57□□□□□ -0.4
SHOX-204ENST00000554971 KNCNA6PVL3 124 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 FXYD2P54710 66 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 HERVK_113P61574 105 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 IGKV3-20P01619 116 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 LINC00467Q9BRT7 94 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 CST9LQ9H4G1 147 aa12.56□□□□□ -0.4
SHOX-204ENST00000554971 CMC4P56277 68 aaPredicted RBP12.55□□□□□ -0.4
SHOX-204ENST00000554971 ZNF876PQ49A33 203 aa12.55□□□□□ -0.4
SHOX-204ENST00000554971 RNASE8Q8TDE3 154 aaKnown RBP12.55□□□□□ -0.4
SHOX-204ENST00000554971 H3BMM0 161 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 TSHBP01222 138 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 ZNF56Q15929 161 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 PHLDA1Q8WV24 401 aaPredicted RBP12.54□□□□□ -0.4
SHOX-204ENST00000554971 CLUHP3Q96NS8 147 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 FAM74A4Q5TZK3 123 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 SBSPONQ8IVN8 264 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 HIST1H4GQ99525 98 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 PRADC1Q9BSG0 188 aa12.54□□□□□ -0.4
SHOX-204ENST00000554971 I3L3M4 83 aa12.53□□□□□ -0.4
SHOX-204ENST00000554971 RAB37Q96AX2 223 aa12.53□□□□□ -0.4
SHOX-204ENST00000554971 TRBV7-3A0A075B6L6 115 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 A0A1B0GWB2 263 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 C11orf86A6NJI1 115 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 RPL35AP18077 110 aaKnown RBP12.52□□□□□ -0.4
SHOX-204ENST00000554971 RBX1P62877 108 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 OCIAD2Q56VL3 154 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 MORN3Q6PF18 240 aaPredicted RBP12.52□□□□□ -0.4
SHOX-204ENST00000554971 NEGR1Q7Z3B1 354 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 SPCS1Q9Y6A9 102 aa12.52□□□□□ -0.4
SHOX-204ENST00000554971 IGLV4-69A0A075B6H9 119 aa12.52□□□□□ -0.41
SHOX-204ENST00000554971 A8MWV9 139 aa12.52□□□□□ -0.41
SHOX-204ENST00000554971 B9D2Q9BPU9 175 aa12.52□□□□□ -0.41
SHOX-204ENST00000554971 K7ERU9 68 aa12.51□□□□□ -0.41
SHOX-204ENST00000554971 CRYBA4P53673 196 aa12.51□□□□□ -0.41
SHOX-204ENST00000554971 CSMD3Q7Z407 3707 aa12.51□□□□□ -0.41
SHOX-204ENST00000554971 GIG44P09565 113 aaPredicted RBP12.5□□□□□ -0.41
SHOX-204ENST00000554971 NFE4Q86UQ8 179 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 STHQ8IWL8 128 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 NHP2Q9NX24 153 aaKnown RBP12.5□□□□□ -0.41
SHOX-204ENST00000554971 TMEM238LA0A1B0GVL6 79 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 A6NJY4 79 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 M0R2P5 195 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 C12orf74Q32Q52 190 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 C20orf203Q8NBC4 194 aa12.5□□□□□ -0.41
SHOX-204ENST00000554971 ZNF815PA8K554 130 aa12.49□□□□□ -0.41
SHOX-204ENST00000554971 ZNF415Q09FC8 603 aa12.49□□□□□ -0.41
SHOX-204ENST00000554971 SPXQ9BT56 116 aa12.49□□□□□ -0.41
SHOX-204ENST00000554971 RPL39P62891 51 aaKnown RBP12.49□□□□□ -0.41
SHOX-204ENST00000554971 PYGO1Q9Y3Y4 419 aa12.49□□□□□ -0.41
SHOX-204ENST00000554971 IGLL5B9A064 214 aa12.47□□□□□ -0.41
SHOX-204ENST00000554971 RHODO00212 210 aa12.47□□□□□ -0.41
SHOX-204ENST00000554971 RBMY1A1P0DJD3 496 aaKnown RBP12.47□□□□□ -0.41
SHOX-204ENST00000554971 RBMY1CP0DJD4 496 aa12.47□□□□□ -0.41
SHOX-204ENST00000554971 RBMY1FQ15415 496 aaKnown RBP12.47□□□□□ -0.41
SHOX-204ENST00000554971 KIR2DL5BQ8NHK3 375 aa12.47□□□□□ -0.41
SHOX-204ENST00000554971 TM2D3Q9BRN9 247 aa12.47□□□□□ -0.41
SHOX-204ENST00000554971 P0DMU3 169 aa12.46□□□□□ -0.42
SHOX-204ENST00000554971 FAM231AP0DMU4 169 aa12.46□□□□□ -0.42
SHOX-204ENST00000554971 FAM231CP0DMU5 169 aa12.46□□□□□ -0.42
SHOX-204ENST00000554971 SCGB1D4Q6XE38 83 aa12.46□□□□□ -0.42
SHOX-204ENST00000554971 SPANXB1Q9NS25 103 aaPredicted RBP12.46□□□□□ -0.42
SHOX-204ENST00000554971 DNAJC30Q96LL9 226 aa12.45□□□□□ -0.42
SHOX-204ENST00000554971 INSP01308 110 aa12.45□□□□□ -0.42
SHOX-204ENST00000554971 APOC4P55056 127 aa12.45□□□□□ -0.42
SHOX-204ENST00000554971 ZNF479Q96JC4 524 aa12.45□□□□□ -0.42
SHOX-204ENST00000554971 RETNQ9HD89 108 aa12.45□□□□□ -0.42
SHOX-204ENST00000554971 DEFB135Q30KP9 77 aa12.44□□□□□ -0.42
SHOX-204ENST00000554971 NAA38Q9BRA0 125 aaKnown RBP12.44□□□□□ -0.42
SHOX-204ENST00000554971 TNFRSF18Q9Y5U5 241 aa12.44□□□□□ -0.42
SHOX-204ENST00000554971 K7ERJ3 54 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 RRN3P1Q2M238 152 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 TMEM170BQ5T4T1 132 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 CSNK1G2-AS1Q8NCQ2 148 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 VCX2Q9H322 139 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 SRSF9Q13242 221 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHOX-204ENST00000554971 ZNRF2Q8NHG8 242 aa12.43□□□□□ -0.42
SHOX-204ENST00000554971 XCL2Q9UBD3 114 aa12.42□□□□□ -0.42
SHOX-204ENST00000554971 A0A0J9YY99 117 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms