RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 CHTOPQ9Y3Y2 248 aaKnown RBP9.6□□□□□ -0.87
PTCH1-215ENST00000547672 SPART-AS1P0CW21 52 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 SLC25A29Q8N8R3 303 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 TIMM21Q9BVV7 248 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 GTSF1LQ9H1H1 148 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 VCX2Q9H322 139 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 TENM1Q9UKZ4 2725 aa9.59□□□□□ -0.87
PTCH1-215ENST00000547672 P0DMU3 169 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 FAM231AP0DMU4 169 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 FAM231CP0DMU5 169 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 DEFB130BP0DP73 79 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 DEFB130AP0DP74 79 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 SLC25A34Q6PIV7 304 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 BAALCQ8WXS3 180 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 HHLA3Q9XRX5 114 aa9.58□□□□□ -0.88
PTCH1-215ENST00000547672 PRSS29PA6NIE9 313 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 H7C423 109 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 UBE2D3P61077 147 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 UBE2D2P62837 147 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 FHL2Q14192 279 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 LBHQ53QV2 105 aaPredicted RBP9.57□□□□□ -0.88
PTCH1-215ENST00000547672 DKK2Q9UBU2 259 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 PRO0255Q9UI72 69 aa9.57□□□□□ -0.88
PTCH1-215ENST00000547672 NACAE9PAV3 2078 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 hDV102S1A0JD36 115 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 LINC00587B1AMM8 73 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 KRTAP10-11P60412 298 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 DAD1P61803 113 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 FAM222AQ5U5X8 452 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 DGAT2L7PQ6IED9 249 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 CST9LQ9H4G1 147 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 MRPL35Q9NZE8 188 aaKnown RBP9.56□□□□□ -0.88
PTCH1-215ENST00000547672 NOTCH3Q9UM47 2321 aa9.56□□□□□ -0.88
PTCH1-215ENST00000547672 IGHV4-28A0A0C4DH34 117 aa9.55□□□□□ -0.88
PTCH1-215ENST00000547672 HNRNPA3P51991 378 aaKnown RBP9.55□□□□□ -0.88
PTCH1-215ENST00000547672 HERVK_113P61574 105 aa9.55□□□□□ -0.88
PTCH1-215ENST00000547672 RPL39P62891 51 aaKnown RBP9.55□□□□□ -0.88
PTCH1-215ENST00000547672 SH2D6Q7Z4S9 175 aa9.55□□□□□ -0.88
PTCH1-215ENST00000547672 MRPS16Q9Y3D3 137 aaKnown RBP9.55□□□□□ -0.88
PTCH1-215ENST00000547672 FBN3Q75N90 2809 aa9.55□□□□□ -0.88
PTCH1-215ENST00000547672 DNHD1Q96M86 4753 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 GAGE12JA6NER3 117 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 DLEU1O43261 78 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 ATP5G1P05496 136 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 COX8AP10176 69 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 MRPS36P82909 103 aaKnown RBP9.54□□□□□ -0.88
PTCH1-215ENST00000547672 GAGE1Q13065 139 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 GAGE4Q13068 117 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 GAGE5Q13069 117 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 GAGE13Q4V321 117 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 SAMD5Q5TGI4 173 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 C14orf144Q96I85 54 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 C2orf88Q9BSF0 95 aa9.54□□□□□ -0.88
PTCH1-215ENST00000547672 CSDC2Q9Y534 153 aaKnown RBP9.54□□□□□ -0.88
PTCH1-215ENST00000547672 TRBV25-1A0A075B6N4 114 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 UBE2L6O14933 153 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 SIVA1O15304 175 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 MAJINQ3KP22 176 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 Q8NAQ8 132 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 PHLDA1Q8WV24 401 aaPredicted RBP9.53□□□□□ -0.88
PTCH1-215ENST00000547672 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 CHCHD7Q9BUK0 85 aa9.53□□□□□ -0.88
PTCH1-215ENST00000547672 M0R143 59 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 PAX4O43316 350 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 SEC11AP67812 179 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 ZC2HC1BQ5TFG8 222 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 TMEM101Q96IK0 257 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 VWFP04275 2813 aa9.52□□□□□ -0.89
PTCH1-215ENST00000547672 IGLV4-3A0A075B6K6 122 aa9.51□□□□□ -0.89
PTCH1-215ENST00000547672 ZNF25P17030 456 aaPredicted RBP9.51□□□□□ -0.89
PTCH1-215ENST00000547672 STPG4Q8N801 248 aa9.51□□□□□ -0.89
PTCH1-215ENST00000547672 IGHV3-38A0A0C4DH36 116 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 G3V4G9 280 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 AMMECR1LQ6DCA0 310 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 NFE4Q86UQ8 179 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 ATP6V0E2Q8NHE4 81 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 AMELXQ99217 191 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 UBE2D4Q9Y2X8 147 aa9.5□□□□□ -0.89
PTCH1-215ENST00000547672 TRAV26-1A0A087WT03 109 aa9.49□□□□□ -0.89
PTCH1-215ENST00000547672 NMUP48645 174 aa9.49□□□□□ -0.89
PTCH1-215ENST00000547672 BOD1L2Q8IYS8 172 aa9.49□□□□□ -0.89
PTCH1-215ENST00000547672 C11orf68Q9H3H3 251 aaKnown RBP9.49□□□□□ -0.89
PTCH1-215ENST00000547672 Q9UF83 564 aa9.49□□□□□ -0.89
PTCH1-215ENST00000547672 TRBV6-8A0A0A6YYG3 113 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 C11orf86A6NJI1 115 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 GYPEP15421 78 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 ANKRD39Q53RE8 183 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 OR5A1Q8NGJ0 315 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 DEFB104AQ8WTQ1 72 aa9.48□□□□□ -0.89
PTCH1-215ENST00000547672 FBN1P35555 2871 aaKnown RBP9.48□□□□□ -0.89
PTCH1-215ENST00000547672 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.47□□□□□ -0.89
PTCH1-215ENST00000547672 IGKV2-29A2NJV5 120 aaPredicted RBP9.47□□□□□ -0.89
PTCH1-215ENST00000547672 E9PLD3 99 aa9.47□□□□□ -0.89
PTCH1-215ENST00000547672 LINC00694P0DN24 101 aa9.47□□□□□ -0.89
PTCH1-215ENST00000547672 FGF6P10767 208 aa9.47□□□□□ -0.89
PTCH1-215ENST00000547672 CTAG1AP78358 180 aa9.47□□□□□ -0.89
PTCH1-215ENST00000547672 MRPL23Q16540 153 aaKnown RBP9.47□□□□□ -0.89
PTCH1-215ENST00000547672 KPRPQ5T749 579 aaPredicted RBP9.47□□□□□ -0.89
PTCH1-215ENST00000547672 TINCRA0A1B0GVN0 87 aa9.46□□□□□ -0.9
PTCH1-215ENST00000547672 H3BNG1 76 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms