RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 WFDC10BQ8IUB3 73 aa11.71□□□□□ -0.53
LIG1-204ENST00000542460 TRBV25-1A0A075B6N4 114 aa11.7□□□□□ -0.54
LIG1-204ENST00000542460 IGHV1-24A0A0C4DH33 117 aa11.7□□□□□ -0.54
LIG1-204ENST00000542460 IQCJQ1A5X6 159 aa11.7□□□□□ -0.54
LIG1-204ENST00000542460 DEFB104AQ8WTQ1 72 aa11.7□□□□□ -0.54
LIG1-204ENST00000542460 PRSS47A8MTI9 375 aa11.69□□□□□ -0.54
LIG1-204ENST00000542460 KIR2DL4Q99706 377 aa11.69□□□□□ -0.54
LIG1-204ENST00000542460 SMIM2Q9BVW6 85 aa11.69□□□□□ -0.54
LIG1-204ENST00000542460 EPPK1P58107 5090 aaKnown RBP11.68□□□□□ -0.54
LIG1-204ENST00000542460 DNAH10OSP0CZ25 163 aa11.68□□□□□ -0.54
LIG1-204ENST00000542460 AMTP48728 403 aa11.68□□□□□ -0.54
LIG1-204ENST00000542460 ALKBH7Q9BT30 221 aaPredicted RBP11.68□□□□□ -0.54
LIG1-204ENST00000542460 MAP1LC3AQ9H492 121 aa11.68□□□□□ -0.54
LIG1-204ENST00000542460 VPS13DQ5THJ4 4388 aa11.68□□□□□ -0.54
LIG1-204ENST00000542460 TSHBP01222 138 aa11.67□□□□□ -0.54
LIG1-204ENST00000542460 CHCHD5Q9BSY4 110 aa11.67□□□□□ -0.54
LIG1-204ENST00000542460 IGLV2-18A0A075B6J9 118 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 TCAPO15273 167 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 S100A6P06703 90 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 FCER1GP30273 86 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 LINC01556Q5JQF7 62 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 NIT1Q86X76 327 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 TMEM243Q9BU79 118 aa11.66□□□□□ -0.54
LIG1-204ENST00000542460 LOC389332A0A1B0GUA5 103 aa11.65□□□□□ -0.54
LIG1-204ENST00000542460 K7EP13 123 aa11.65□□□□□ -0.54
LIG1-204ENST00000542460 PKIAP61925 76 aa11.65□□□□□ -0.54
LIG1-204ENST00000542460 TRAV9-2A0A087WT02 112 aa11.65□□□□□ -0.55
LIG1-204ENST00000542460 NBDYA0A0U1RRE5 68 aa11.65□□□□□ -0.55
LIG1-204ENST00000542460 TMEM262E9PQX1 116 aa11.65□□□□□ -0.55
LIG1-204ENST00000542460 A0A087WX48 190 aa11.64□□□□□ -0.55
LIG1-204ENST00000542460 UBE2L6O14933 153 aa11.64□□□□□ -0.55
LIG1-204ENST00000542460 TTC32Q5I0X7 151 aa11.64□□□□□ -0.55
LIG1-204ENST00000542460 Q8N8P6 123 aa11.64□□□□□ -0.55
LIG1-204ENST00000542460 CHCHD7Q9BUK0 85 aa11.64□□□□□ -0.55
LIG1-204ENST00000542460 ESDP10768 282 aa11.63□□□□□ -0.55
LIG1-204ENST00000542460 NXT2Q9NPJ8 142 aaKnown RBP11.63□□□□□ -0.55
LIG1-204ENST00000542460 H7C423 109 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 M0R2N4 97 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 IGHV3-30P01768 117 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 IGHV3-33P01772 117 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 TRGC2P03986 189 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 IGHV3-30-3P0DP02 117 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 IGHV3-30-5P0DP03 117 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 GAGE6Q13070 117 aa11.62□□□□□ -0.55
LIG1-204ENST00000542460 IFI27P40305 119 aaPredicted RBP11.61□□□□□ -0.55
LIG1-204ENST00000542460 Q6ZR54 194 aa11.61□□□□□ -0.55
LIG1-204ENST00000542460 C10orf126Q8N4M7 172 aa11.61□□□□□ -0.55
LIG1-204ENST00000542460 KMT2AQ03164 3969 aa11.61□□□□□ -0.55
LIG1-204ENST00000542460 K7EMI3 77 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 SNRPEP62304 92 aaKnown RBP11.6□□□□□ -0.55
LIG1-204ENST00000542460 MPV17L2Q567V2 206 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 Q8N3U1 123 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 PRSS3P2Q8NHM4 247 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.6□□□□□ -0.55
LIG1-204ENST00000542460 IGKV2-29A2NJV5 120 aaPredicted RBP11.6□□□□□ -0.55
LIG1-204ENST00000542460 AKR1D1P51857 326 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 KRTAP1-5Q9BYS1 174 aa11.6□□□□□ -0.55
LIG1-204ENST00000542460 BIRC6Q9NR09 4857 aa11.59□□□□□ -0.55
LIG1-204ENST00000542460 A0A1B0GUV1 79 aa11.59□□□□□ -0.55
LIG1-204ENST00000542460 RBX1P62877 108 aa11.59□□□□□ -0.55
LIG1-204ENST00000542460 C18orf32Q8TCD1 76 aa11.59□□□□□ -0.55
LIG1-204ENST00000542460 ORMDL2Q53FV1 153 aa11.58□□□□□ -0.56
LIG1-204ENST00000542460 AMMECR1LQ6DCA0 310 aa11.58□□□□□ -0.56
LIG1-204ENST00000542460 Q8N976 141 aa11.58□□□□□ -0.56
LIG1-204ENST00000542460 C20orf203Q8NBC4 194 aa11.58□□□□□ -0.56
LIG1-204ENST00000542460 TMEM18Q96B42 140 aa11.58□□□□□ -0.56
LIG1-204ENST00000542460 C5orf52A6NGY3 159 aa11.57□□□□□ -0.56
LIG1-204ENST00000542460 IBA57-AS1B1ANH7 110 aa11.57□□□□□ -0.56
LIG1-204ENST00000542460 FGF6P10767 208 aa11.57□□□□□ -0.56
LIG1-204ENST00000542460 LAGE3Q14657 143 aa11.57□□□□□ -0.56
LIG1-204ENST00000542460 ZNF25P17030 456 aaPredicted RBP11.56□□□□□ -0.56
LIG1-204ENST00000542460 BTF3P20290 206 aaKnown RBP11.56□□□□□ -0.56
LIG1-204ENST00000542460 NDUFA6P56556 154 aa11.56□□□□□ -0.56
LIG1-204ENST00000542460 SMAGPQ0VAQ4 97 aa11.56□□□□□ -0.56
LIG1-204ENST00000542460 RNASEKQ6P5S7 137 aaKnown RBP11.56□□□□□ -0.56
LIG1-204ENST00000542460 KLK12Q9UKR0 248 aa11.56□□□□□ -0.56
LIG1-204ENST00000542460 DNAH6Q9C0G6 4158 aa11.56□□□□□ -0.56
LIG1-204ENST00000542460 LINC01546A6NGU7 62 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BKO60814 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 ANGP03950 147 aaKnown RBP11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BJP06899 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BOP23527 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BBP33778 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BDP58876 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BCP62807 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST2H2BEQ16778 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.55□□□□□ -0.56
LIG1-204ENST00000542460 FA2HQ7L5A8 372 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 MRPL52Q86TS9 123 aaKnown RBP11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BHQ93079 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BNQ99877 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 HIST1H2BMQ99879 126 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 G0S2P27469 103 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 TMEM101Q96IK0 257 aa11.55□□□□□ -0.56
LIG1-204ENST00000542460 IGLV4-60A0A075B6I1 120 aa11.54□□□□□ -0.56
LIG1-204ENST00000542460 LINC00614P0C842 121 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 RPL39P62891 51 aaKnown RBP11.53□□□□□ -0.56
LIG1-204ENST00000542460 C1orf134Q5TEV5 83 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 DGAT2L7PQ6IED9 249 aa11.53□□□□□ -0.56
LIG1-204ENST00000542460 C6orf223Q8N319 242 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms