RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 RAB5CP51148 216 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 TMEM97Q5BJF2 176 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 Q5BKY6 102 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 RPL7L1Q6DKI1 246 aaKnown RBP4.94□□□□□ -1.62
CD44-232ENST00000531118 FER1L6-AS1Q8NA97 138 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 C5orf17Q8NAS9 161 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 SUN5Q8TC36 379 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 NKX6-2Q9C056 277 aaPredicted RBP4.94□□□□□ -1.62
CD44-232ENST00000531118 PSG8Q9UQ74 426 aa4.94□□□□□ -1.62
CD44-232ENST00000531118 GVQW2A0A096LPI5 108 aaPredicted RBP4.93□□□□□ -1.62
CD44-232ENST00000531118 CTXND1A0A1B0GTU2 59 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 H0Y9J4 135 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 M0R381 172 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 MT-ND6P03923 174 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 TCRAP04437 139 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 KRTAP1-4P0C5Y4 121 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 GCHFRP30047 84 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 EIF5AP63241 154 aaKnown RBP4.93□□□□□ -1.62
CD44-232ENST00000531118 ZNF345Q14585 488 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 ZNF56Q15929 161 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 PRR27Q6MZM9 219 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.93□□□□□ -1.62
CD44-232ENST00000531118 STOML3Q8TAV4 291 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 DIRC1Q969H9 104 aa4.93□□□□□ -1.62
CD44-232ENST00000531118 IGLV4-60A0A075B6I1 120 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 TRBV6-1A0A0K0K1D8 114 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 KANTRA0A1W2PQU2 76 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 A0A1W2PRE2 83 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 HMSDA8MTL9 139 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 B4DEV8 164 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 ARMS2P0C7Q2 107 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 FLI1Q01543 452 aaPredicted RBP4.92□□□□□ -1.62
CD44-232ENST00000531118 IQCJQ1A5X6 159 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 C1orf137Q5JT78 98 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 DNLZQ5SXM8 178 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 CFAP161Q6P656 301 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 PRNTQ86SH4 94 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 DERL1Q9BUN8 251 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 PHLDA3Q9Y5J5 127 aa4.92□□□□□ -1.62
CD44-232ENST00000531118 IGHV1-24A0A0C4DH33 117 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 UMAD1C9J7I0 102 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 PFDN1O60925 122 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 UBE2D1P51668 147 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 RAB4BP61018 213 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 SAPCD1Q5SSQ6 148 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 ZFP82Q8N141 532 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 KCNRGQ8N5I3 272 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 EPDR1Q9UM22 224 aa4.91□□□□□ -1.62
CD44-232ENST00000531118 TRAV1-1A0A0B4J248 108 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 GRIFINA4D1Z8 144 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 SMLR1H3BR10 107 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 M0R036 132 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 IGLV7-43P04211 117 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 TPT1P13693 172 aaKnown RBP4.9□□□□□ -1.63
CD44-232ENST00000531118 RPL13AP40429 203 aaKnown RBP4.9□□□□□ -1.63
CD44-232ENST00000531118 SULT1A2P50226 295 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 EIF5AL1Q6IS14 154 aaKnown RBP4.9□□□□□ -1.63
CD44-232ENST00000531118 HIST1H2BAQ96A08 127 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 CARD19Q96LW7 228 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 TCEAL7Q9BRU2 100 aa4.9□□□□□ -1.63
CD44-232ENST00000531118 ZNF471Q9BX82 626 aaPredicted RBP4.9□□□□□ -1.63
CD44-232ENST00000531118 MAP1LC3B2A6NCE7 125 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 KRBOX1C9JBD0 128 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 G3V3Q6 166 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 TEX46H3BTG2 121 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 BCL2L11O43521 198 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 AMTP48728 403 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 UBE2G2P60604 165 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 Q86TA4 180 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 MAP1LC3BQ9GZQ8 125 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 CYTL1Q9NRR1 136 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 ARL2-SNX15V9GYD0 113 aa4.89□□□□□ -1.63
CD44-232ENST00000531118 A0A1B0GUV1 79 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 A0A1W2PNN7 141 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 FAM74A7A6NL05 159 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 FABP5P3A8MUU1 101 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 PEX7O00628 323 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 TSPAN13O95857 204 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 FHITP49789 147 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 LINC01547P58512 204 aaPredicted RBP4.88□□□□□ -1.63
CD44-232ENST00000531118 UBE2G1P62253 170 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 ZNF726P1Q15940 193 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 CST9LP1Q5W188 147 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 FAM213BQ8TBF2 198 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 SFT2D1Q8WV19 159 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 FMC1Q96HJ9 113 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 ZFP30Q9Y2G7 519 aa4.88□□□□□ -1.63
CD44-232ENST00000531118 TMSB15BA0A087X1C1 80 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 IGKV3OR2-268A0A0C4DH90 116 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 SH2D1AO60880 128 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 S100A9P06702 114 aaKnown RBP4.87□□□□□ -1.63
CD44-232ENST00000531118 TMUB2Q71RG4 321 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 PHF5AQ7RTV0 110 aaKnown RBP4.87□□□□□ -1.63
CD44-232ENST00000531118 CHCHD10Q8WYQ3 142 aaPredicted RBP4.87□□□□□ -1.63
CD44-232ENST00000531118 LINC00526Q96FQ7 95 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 TMEM243Q9BU79 118 aa4.87□□□□□ -1.63
CD44-232ENST00000531118 TRAV34A0A0B4J273 112 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 AKR1C3P42330 323 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 GAGE2BQ13066 116 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 C9orf116Q5BN46 136 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms