RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 FAM74A3Q4VXF1 159 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 SMUG1Q53HV7 270 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 PRNTQ86SH4 94 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 STPG4Q8N801 248 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 PSG8Q9UQ74 426 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 TRBV20OR9-2A0A075B6H5 130 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 H3BVH4 76 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 RHODO00212 210 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 AKR1C3P42330 323 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 TAS2R45P59539 299 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 RBX1P62877 108 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 SUMO1P63165 101 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 PIK3CD-AS1Q5SR53 167 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 CST9LP1Q5W188 147 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 PRSS3P2Q8NHM4 247 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 C11orf52Q96A22 123 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 TMEM167BQ9NRX6 74 aa6.89□□□□□ -1.31
LIMCH1-221ENST00000515785 A0A1W2PRE2 83 aa6.88□□□□□ -1.31
LIMCH1-221ENST00000515785 GRIFINA4D1Z8 144 aa6.88□□□□□ -1.31
LIMCH1-221ENST00000515785 TMEM250H0YL14 139 aa6.88□□□□□ -1.31
LIMCH1-221ENST00000515785 NDUFS6O75380 124 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-221ENST00000515785 PRR34Q9NV39 138 aa6.88□□□□□ -1.31
LIMCH1-221ENST00000515785 C7orf77A4D0Y5 90 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 ZNF727A8MUV8 499 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 ARMS2P0C7Q2 107 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 RPL23P62829 140 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 ZNF674Q2M3X9 581 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 ARL6IP6Q8N6S5 226 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 SFRP2Q96HF1 295 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 NKX6-2Q9C056 277 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 ARL2-SNX15V9GYD0 113 aa6.87□□□□□ -1.31
LIMCH1-221ENST00000515785 TRBV10-1A0A0K0K1A3 114 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 FAM231BA6NCW3 169 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 B4DEV8 164 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 M0R381 172 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 TCRAP04437 139 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 TAGLN2P37802 199 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 FLI1Q01543 452 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 PRR4Q16378 134 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 NTM-AS1Q6ZSK4 140 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 CBLN2Q8IUK8 224 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 SVBPQ8N300 66 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 IL36BQ9NZH7 164 aa6.86□□□□□ -1.31
LIMCH1-221ENST00000515785 TRAV34A0A0B4J273 112 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 FABP5P3A8MUU1 101 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 K7EN84 100 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 K7EQM0 130 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 M0R036 132 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 PDE6DO43924 150 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 PKIAP61925 76 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 REG3AQ06141 175 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 NEXN-AS1Q8NBZ9 246 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 OCC1Q8TAD7 63 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 YPEL4Q96NS1 127 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 SMIM7Q9BQ49 75 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 PHLDA3Q9Y5J5 127 aa6.85□□□□□ -1.31
LIMCH1-221ENST00000515785 SNAPINO95295 136 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 RPL35P42766 123 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 RPS10P46783 165 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 TMEM241Q24JQ0 296 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 Q6ZRP5 223 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 OR10G8Q8NGN5 311 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 NAT8Q9UHE5 227 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 EPDR1Q9UM22 224 aa6.84□□□□□ -1.31
LIMCH1-221ENST00000515785 TMSB15BA0A087X1C1 80 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 A0A096LNI7 61 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 TRAV26-2A0A0B4J265 109 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 SERTM2A0A1B0GWG4 89 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 PEX7O00628 323 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 HIGD2BQ4VC39 106 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 SAPCD1Q5SSQ6 148 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 LINC01551Q86U37 167 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 C5orf17Q8NAS9 161 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 ANAPC16Q96DE5 110 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 RPS10P5Q9NQ39 176 aa6.83□□□□□ -1.32
LIMCH1-221ENST00000515785 ADIRFQ15847 76 aa6.82□□□□□ -1.32
LIMCH1-221ENST00000515785 ZNF56Q15929 161 aa6.82□□□□□ -1.32
LIMCH1-221ENST00000515785 CENPWQ5EE01 88 aa6.82□□□□□ -1.32
LIMCH1-221ENST00000515785 PRR26Q8N8Z3 221 aa6.82□□□□□ -1.32
LIMCH1-221ENST00000515785 ISOC2Q96AB3 205 aa6.82□□□□□ -1.32
LIMCH1-221ENST00000515785 TRAV8-4A0A0B4J246 113 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 COLCA2A8K830 154 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 P01737 135 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 RAB4BP61018 213 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 C15orf56Q8N910 161 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 GFRA4Q9GZZ7 299 aa6.81□□□□□ -1.32
LIMCH1-221ENST00000515785 TRBV25-1A0A075B6N4 114 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 GAGE12HA6NDE8 117 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 F5H697 171 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 CXCL1P09341 107 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 CRIP1P50238 77 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 CACNG7P62955 275 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 RHEBQ15382 184 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 DNLZQ5SXM8 178 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 ZNF664Q8N3J9 261 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 C20orf203Q8NBC4 194 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 MLST8Q9BVC4 326 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 PSORS1C2Q9UIG4 136 aa6.8□□□□□ -1.32
LIMCH1-221ENST00000515785 IGLV4-60A0A075B6I1 120 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms