RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 COX6A2Q02221 97 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 SPAG11BQ08648 103 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 SPAG11AQ6PDA7 123 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 C5orf38Q86SI9 138 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 LENEPQ9Y5L5 61 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 CACNA1EQ15878 2313 aa0.92□□□□□ -2.26
NUP54-215ENST00000514313 F6UZH7 168 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 TPPP2P59282 170 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 C9orf153Q5TBE3 101 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 CFAP126Q5VTH2 177 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 TSLPQ969D9 159 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 IFT172Q9UG01 1749 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 KTN1Q86UP2 1357 aaKnown RBP0.91□□□□□ -2.26
NUP54-215ENST00000514313 MRC1P22897 1456 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 QRICH2Q9H0J4 1663 aa0.91□□□□□ -2.26
NUP54-215ENST00000514313 MYH8P13535 1937 aa0.9□□□□□ -2.27
NUP54-215ENST00000514313 M0R135 149 aa0.9□□□□□ -2.27
NUP54-215ENST00000514313 CORTO00230 105 aa0.9□□□□□ -2.27
NUP54-215ENST00000514313 CYP4F30PQ9H0H9 118 aa0.9□□□□□ -2.27
NUP54-215ENST00000514313 UBE2DNLQ8IWF7 75 aa0.89□□□□□ -2.27
NUP54-215ENST00000514313 GNG8Q9UK08 70 aa0.89□□□□□ -2.27
NUP54-215ENST00000514313 PRDM2Q13029 1718 aa0.89□□□□□ -2.27
NUP54-215ENST00000514313 COMMD6Q7Z4G1 85 aa0.88□□□□□ -2.27
NUP54-215ENST00000514313 CACNA1HO95180 2353 aa0.88□□□□□ -2.27
NUP54-215ENST00000514313 SSSCA1O60232 199 aa0.87□□□□□ -2.27
NUP54-215ENST00000514313 SSBP3-AS1Q7Z2R9 100 aa0.87□□□□□ -2.27
NUP54-215ENST00000514313 TMEM203Q969S6 136 aa0.87□□□□□ -2.27
NUP54-215ENST00000514313 LINC00474Q9P2X8 69 aa0.87□□□□□ -2.27
NUP54-215ENST00000514313 UNC13BO14795 1591 aa0.87□□□□□ -2.27
NUP54-215ENST00000514313 TRBV7-3A0A075B6L6 115 aa0.86□□□□□ -2.27
NUP54-215ENST00000514313 IER3IP1Q9Y5U9 82 aa0.86□□□□□ -2.27
NUP54-215ENST00000514313 V9GYH0 126 aa0.86□□□□□ -2.27
NUP54-215ENST00000514313 SMG6Q86US8 1419 aaKnown RBP0.86□□□□□ -2.27
NUP54-215ENST00000514313 CTXND1A0A1B0GTU2 59 aa0.85□□□□□ -2.27
NUP54-215ENST00000514313 S100A1P23297 94 aa0.85□□□□□ -2.27
NUP54-215ENST00000514313 GNG4P50150 75 aa0.85□□□□□ -2.27
NUP54-215ENST00000514313 NPVFQ9HCQ7 196 aa0.85□□□□□ -2.27
NUP54-215ENST00000514313 ZNF815PA8K554 130 aa0.84□□□□□ -2.27
NUP54-215ENST00000514313 PIN1P1O15428 100 aa0.84□□□□□ -2.27
NUP54-215ENST00000514313 NDUFA4L2Q9NRX3 87 aa0.84□□□□□ -2.27
NUP54-215ENST00000514313 MYOM2P54296 1465 aa0.84□□□□□ -2.28
NUP54-215ENST00000514313 PI4KAP42356 2102 aa0.83□□□□□ -2.28
NUP54-215ENST00000514313 DOCK2Q92608 1830 aa0.83□□□□□ -2.28
NUP54-215ENST00000514313 PPP3R1P63098 170 aa0.83□□□□□ -2.28
NUP54-215ENST00000514313 MGST2Q99735 147 aa0.83□□□□□ -2.28
NUP54-215ENST00000514313 ROBO1Q9Y6N7 1651 aa0.82□□□□□ -2.28
NUP54-215ENST00000514313 DYNLRB1Q9NP97 96 aa0.82□□□□□ -2.28
NUP54-215ENST00000514313 TTC28Q96AY4 2481 aa0.82□□□□□ -2.28
NUP54-215ENST00000514313 BDP1A6H8Y1 2624 aa0.81□□□□□ -2.28
NUP54-215ENST00000514313 DPH3P1Q9H4G8 78 aa0.81□□□□□ -2.28
NUP54-215ENST00000514313 CUL7Q14999 1698 aa0.81□□□□□ -2.28
NUP54-215ENST00000514313 SMIM4Q8WVI0 70 aa0.8□□□□□ -2.28
NUP54-215ENST00000514313 NCOA3Q9Y6Q9 1424 aa0.8□□□□□ -2.28
NUP54-215ENST00000514313 PHGR1C9JFL3 82 aa0.79□□□□□ -2.28
NUP54-215ENST00000514313 MYOZ3Q8TDC0 251 aa0.79□□□□□ -2.28
NUP54-215ENST00000514313 AMELXQ99217 191 aa0.79□□□□□ -2.28
NUP54-215ENST00000514313 UBE2L5PA0A1B0GUS4 154 aa0.78□□□□□ -2.28
NUP54-215ENST00000514313 FAM24AA6NFZ4 105 aa0.78□□□□□ -2.28
NUP54-215ENST00000514313 UBE2L3P68036 154 aaKnown RBP0.78□□□□□ -2.28
NUP54-215ENST00000514313 MRPS10P82664 201 aaKnown RBP0.77□□□□□ -2.29
NUP54-215ENST00000514313 WDR7Q9Y4E6 1490 aa0.77□□□□□ -2.29
NUP54-215ENST00000514313 ZNF609O15014 1411 aa0.76□□□□□ -2.29
NUP54-215ENST00000514313 SVBPQ8N300 66 aa0.76□□□□□ -2.29
NUP54-215ENST00000514313 USP24Q9UPU5 2620 aa0.76□□□□□ -2.29
NUP54-215ENST00000514313 ZNF236Q9UL36 1845 aa0.75□□□□□ -2.29
NUP54-215ENST00000514313 TPRP12270 2363 aaKnown RBP0.75□□□□□ -2.29
NUP54-215ENST00000514313 F8VRH5 84 aa0.75□□□□□ -2.29
NUP54-215ENST00000514313 HMGN4O00479 90 aa0.75□□□□□ -2.29
NUP54-215ENST00000514313 BAGE2Q86Y30 109 aa0.75□□□□□ -2.29
NUP54-215ENST00000514313 IGLC7A0M8Q6 106 aa0.74□□□□□ -2.29
NUP54-215ENST00000514313 SPINK8P0C7L1 97 aa0.74□□□□□ -2.29
NUP54-215ENST00000514313 EIF4G3O43432 1585 aaKnown RBP0.74□□□□□ -2.29
NUP54-215ENST00000514313 IFITM1P13164 125 aa0.72□□□□□ -2.29
NUP54-215ENST00000514313 Q5BKY6 102 aa0.72□□□□□ -2.29
NUP54-215ENST00000514313 TMEM170BQ5T4T1 132 aa0.72□□□□□ -2.29
NUP54-215ENST00000514313 PSME4Q14997 1843 aa0.72□□□□□ -2.29
NUP54-215ENST00000514313 MUC5BQ9HC84 5762 aaPredicted RBP0.71□□□□□ -2.3
NUP54-215ENST00000514313 UQCR11O14957 56 aa0.71□□□□□ -2.3
NUP54-215ENST00000514313 HAMPP81172 84 aa0.71□□□□□ -2.3
NUP54-215ENST00000514313 LINC01558Q9Y6Z2 57 aa0.71□□□□□ -2.3
NUP54-215ENST00000514313 C10orf71Q711Q0 1435 aa0.71□□□□□ -2.3
NUP54-215ENST00000514313 ASXL3Q9C0F0 2248 aa0.7□□□□□ -2.3
NUP54-215ENST00000514313 A0A0D9SFI3 127 aa0.7□□□□□ -2.3
NUP54-215ENST00000514313 CHKB-CPT1BH3BT56 60 aa0.7□□□□□ -2.3
NUP54-215ENST00000514313 ATP5EP56381 51 aaPredicted RBP0.7□□□□□ -2.3
NUP54-215ENST00000514313 LINC00472Q9H8W2 130 aa0.7□□□□□ -2.3
NUP54-215ENST00000514313 ABCA12Q86UK0 2595 aa0.69□□□□□ -2.3
NUP54-215ENST00000514313 LOC285095A0A1B0GVY8 99 aa0.69□□□□□ -2.3
NUP54-215ENST00000514313 DCDP81605 110 aaKnown RBP0.69□□□□□ -2.3
NUP54-215ENST00000514313 FAM213BQ8TBF2 198 aa0.69□□□□□ -2.3
NUP54-215ENST00000514313 PZPP20742 1482 aa0.68□□□□□ -2.3
NUP54-215ENST00000514313 GNG11P61952 73 aa0.68□□□□□ -2.3
NUP54-215ENST00000514313 COX17Q14061 63 aa0.68□□□□□ -2.3
NUP54-215ENST00000514313 CACNA1CQ13936 2221 aa0.67□□□□□ -2.3
NUP54-215ENST00000514313 CNFNQ9BYD5 112 aa0.67□□□□□ -2.3
NUP54-215ENST00000514313 SHROOM2Q13796 1616 aa0.67□□□□□ -2.3
NUP54-215ENST00000514313 SPINK1P00995 79 aa0.66□□□□□ -2.3
NUP54-215ENST00000514313 WHAMMP3Q1A5X7 153 aa0.66□□□□□ -2.3
NUP54-215ENST00000514313 AHNAKQ09666 5890 aaKnown RBP0.66□□□□□ -2.3
NUP54-215ENST00000514313 PLXNB2O15031 1838 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms