RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RNASE3P12724 160 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 LINC00315P59091 139 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 FP248Q71RG6 208 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 TRBV12-3P01733 135 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 IGHV4OR15-8A0A075B7B6 117 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 A0A087WW49 117 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 KNCNA6PVL3 124 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 LINC00482Q8N8I6 264 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 NBR2O15453 112 aa8.88□□□□□ -0.99
LIMCH1-213ENST00000511496 RPL28P46779 137 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-213ENST00000511496 UBE2D4Q9Y2X8 147 aa8.88□□□□□ -0.99
LIMCH1-213ENST00000511496 TMEM178BH3BS89 294 aa8.88□□□□□ -0.99
LIMCH1-213ENST00000511496 MDS2Q8NDY4 140 aa8.88□□□□□ -0.99
LIMCH1-213ENST00000511496 SMIM26A0A096LP01 95 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 TRBV27A0A0K0K1C4 114 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 NDUFC2-KCTD14E9PQ53 114 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 BEAN1Q3B7T3 259 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 C16orf95Q9H693 158 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 F6UB75 175 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 IGLV1-47P01700 117 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 RBM3P98179 157 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 SS18Q15532 418 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 ZFAND2AQ8N6M9 145 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 C20orf203Q8NBC4 194 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 KIF25-AS1Q9Y6Z4 181 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 BOD1L1Q8NFC6 3051 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 VSIG2Q96IQ7 327 aa8.87□□□□□ -0.99
LIMCH1-213ENST00000511496 AKAP6Q13023 2319 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 PSMB8P28062 276 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 FAM19A1Q7Z5A9 133 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 LINC00308Q8TCZ7 52 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 SNURFQ9Y675 71 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 LY6G5BQ8NDX9 201 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 CLEC19AQ6UXS0 136 aa8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 RNASE6Q93091 150 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 PTPRZ1P23471 2315 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-213ENST00000511496 ATP1A1-AS1Q5TC04 95 aa8.85□□□□□ -0.99
LIMCH1-213ENST00000511496 MPLKIPQ8TAP9 179 aa8.85□□□□□ -0.99
LIMCH1-213ENST00000511496 C20orf173Q96LM9 149 aa8.85□□□□□ -0.99
LIMCH1-213ENST00000511496 NCR3O14931 201 aa8.85□□□□□ -0.99
LIMCH1-213ENST00000511496 TMEM105Q8N8V8 129 aa8.85□□□□□ -0.99
LIMCH1-213ENST00000511496 C15orf32Q32M92 178 aa8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 ZNF784Q8NCA9 323 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 SORL1Q92673 2214 aa8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 ENHOQ6UWT2 76 aa8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 H7BZZ5 65 aa8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 FAM222AQ5U5X8 452 aa8.84□□□□□ -0.99
LIMCH1-213ENST00000511496 C22orf34Q6ZV56 151 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 SPTBN2O15020 2390 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 LYPD5Q6UWN5 251 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 NBL1P41271 181 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 ECSCRQ19T08 205 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 Q9H8V8 135 aa8.83□□□□□ -1
LIMCH1-213ENST00000511496 CACNA1GO43497 2377 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 A0A1W2PRX2 142 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 KLK9Q9UKQ9 250 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 ADGRG4Q8IZF6 3080 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 SPTA1P02549 2419 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 SOCS3O14543 225 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 TIMM17BO60830 172 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 MRPS36P82909 103 aaKnown RBP8.82□□□□□ -1
LIMCH1-213ENST00000511496 SOSTDC1Q6X4U4 206 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 RMI2Q96E14 147 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 SIRPDQ9H106 197 aa8.82□□□□□ -1
LIMCH1-213ENST00000511496 RELNP78509 3460 aa8.81□□□□□ -1
LIMCH1-213ENST00000511496 PATE3B3GLJ2 98 aa8.81□□□□□ -1
LIMCH1-213ENST00000511496 F8WEM9 126 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 RNF5Q99942 180 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 A0A087WYN8 130 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 M0QY20 66 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 SLPIP03973 132 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 PIK3CD-AS1Q5SR53 167 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 CDKN2A-AS1Q9UH64 79 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 IGHV3-73A0A0B4J1V6 119 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 TRBV7-6A0A0J9YX20 115 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 EPM2AB3EWF7 344 aa8.8□□□□□ -1
LIMCH1-213ENST00000511496 S100A7L2Q5SY68 101 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 BPESC1Q9GZL8 116 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 LYNX1G3V0Z9 82 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 LYNX1P0DP58 116 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 MRPL53Q96EL3 112 aaKnown RBP8.79□□□□□ -1
LIMCH1-213ENST00000511496 SVEP1Q4LDE5 3571 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 TRBV6-5A0A0K0K1A5 114 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 LENEPQ9Y5L5 61 aa8.79□□□□□ -1
LIMCH1-213ENST00000511496 CCKP06307 115 aa8.78□□□□□ -1
LIMCH1-213ENST00000511496 MED14OSP0DP75 135 aa8.78□□□□□ -1
LIMCH1-213ENST00000511496 HIST2H2BCQ6DN03 193 aa8.78□□□□□ -1
LIMCH1-213ENST00000511496 HIST2H2BDQ6DRA6 164 aa8.78□□□□□ -1
LIMCH1-213ENST00000511496 RETNQ9HD89 108 aa8.77□□□□□ -1.01
LIMCH1-213ENST00000511496 LECT2O14960 151 aa8.77□□□□□ -1.01
LIMCH1-213ENST00000511496 DPM3Q9P2X0 92 aa8.77□□□□□ -1.01
LIMCH1-213ENST00000511496 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-213ENST00000511496 IGKV2-29A2NJV5 120 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-213ENST00000511496 NDUFA1O15239 70 aa8.76□□□□□ -1.01
LIMCH1-213ENST00000511496 IGKV3-20P01619 116 aa8.76□□□□□ -1.01
LIMCH1-213ENST00000511496 ATMQ13315 3056 aa8.75□□□□□ -1.01
LIMCH1-213ENST00000511496 COL6A6A6NMZ7 2263 aa8.75□□□□□ -1.01
LIMCH1-213ENST00000511496 FAM104AQ969W3 186 aa8.75□□□□□ -1.01
LIMCH1-213ENST00000511496 ITLN2Q8WWU7 325 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-213ENST00000511496 DMXL1Q9Y485 3027 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms