RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 STOML3Q8TAV4 291 aa8.68□□□□□ -1.02
PRPF40A-211ENST00000493468 UPK1BO75841 260 aa8.67□□□□□ -1.02
PRPF40A-211ENST00000493468 PTTG1IPP53801 180 aa8.67□□□□□ -1.02
PRPF40A-211ENST00000493468 S100ZQ8WXG8 99 aa8.67□□□□□ -1.02
PRPF40A-211ENST00000493468 NIT2Q9NQR4 276 aa8.67□□□□□ -1.02
PRPF40A-211ENST00000493468 IGKV3OR2-268A0A0C4DH90 116 aa8.66□□□□□ -1.02
PRPF40A-211ENST00000493468 DEFA3P59666 94 aa8.66□□□□□ -1.02
PRPF40A-211ENST00000493468 SSTP61278 116 aa8.66□□□□□ -1.02
PRPF40A-211ENST00000493468 PRR26Q8N8Z3 221 aa8.66□□□□□ -1.02
PRPF40A-211ENST00000493468 IGHV1-58A0A0C4DH39 117 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 MAP1LC3B2A6NCE7 125 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 MT-ND6P03923 174 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 CST9LP1Q5W188 147 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 FER1L6-AS1Q8NA97 138 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 MAP1LC3BQ9GZQ8 125 aa8.65□□□□□ -1.02
PRPF40A-211ENST00000493468 BORCS7-ASMTA0A0B4J1R7 106 aa8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 IGLC6P0CF74 106 aa8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 AKR1C8PQ5T2L2 129 aa8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 RPL7L1Q6DKI1 246 aaKnown RBP8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 BAGE2Q86Y30 109 aa8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 DIRC1Q969H9 104 aa8.64□□□□□ -1.03
PRPF40A-211ENST00000493468 IGLV1-50A0A075B6I6 118 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 LOC107984640A0A0U1RRK4 108 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 H7C423 109 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 IFITM3Q01628 133 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 SYCNQ0VAF6 134 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 PRR4Q16378 134 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 AMMECR1LQ6DCA0 310 aa8.63□□□□□ -1.03
PRPF40A-211ENST00000493468 A0A1W2PNN7 141 aa8.62□□□□□ -1.03
PRPF40A-211ENST00000493468 C1orf137Q5JT78 98 aa8.62□□□□□ -1.03
PRPF40A-211ENST00000493468 LINC00526Q96FQ7 95 aa8.62□□□□□ -1.03
PRPF40A-211ENST00000493468 NDUFA13Q9P0J0 144 aa8.62□□□□□ -1.03
PRPF40A-211ENST00000493468 NCR2O95944 276 aa8.61□□□□□ -1.03
PRPF40A-211ENST00000493468 TRGC1P0CF51 173 aa8.61□□□□□ -1.03
PRPF40A-211ENST00000493468 OR5A1Q8NGJ0 315 aa8.61□□□□□ -1.03
PRPF40A-211ENST00000493468 SCO2A0A1W2PP80 73 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 H0Y9J4 135 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 ZNF561-AS1K7EIQ3 104 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 PAGE4O60829 102 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 IGLV7-43P04211 117 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 ZNF25P17030 456 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 NTF3P20783 257 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 XCL1P47992 114 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 GAGE2BQ13066 116 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 RNASEKQ6P5S7 137 aaKnown RBP8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 ISOC2Q96AB3 205 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 TPPP3Q9BW30 176 aa8.6□□□□□ -1.03
PRPF40A-211ENST00000493468 CCL25O15444 150 aa8.59□□□□□ -1.03
PRPF40A-211ENST00000493468 FGF6P10767 208 aa8.59□□□□□ -1.03
PRPF40A-211ENST00000493468 CAMPP49913 170 aa8.59□□□□□ -1.03
PRPF40A-211ENST00000493468 RPS20P60866 119 aaKnown RBP8.59□□□□□ -1.03
PRPF40A-211ENST00000493468 C9orf116Q5BN46 136 aaPredicted RBP8.59□□□□□ -1.03
PRPF40A-211ENST00000493468 LINC00959A0A1B0GUT2 108 aa8.58□□□□□ -1.04
PRPF40A-211ENST00000493468 F2Z2F3 143 aa8.58□□□□□ -1.04
PRPF40A-211ENST00000493468 Q6ZNX1 250 aa8.58□□□□□ -1.04
PRPF40A-211ENST00000493468 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 IGKV2-29A2NJV5 120 aaPredicted RBP8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 PFDN1O60925 122 aa8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 APCSP02743 223 aa8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 KRTAP1-4P0C5Y4 121 aa8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 CD164L2Q6UWJ8 174 aa8.57□□□□□ -1.04
PRPF40A-211ENST00000493468 IGLV4-69A0A075B6H9 119 aa8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 APOMO95445 188 aa8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 RPL13AP40429 203 aaKnown RBP8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 DEFA1P59665 94 aa8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 PHF5AQ7RTV0 110 aaKnown RBP8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 NUP35Q8NFH5 326 aa8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 OR2D3Q8NGH3 330 aa8.56□□□□□ -1.04
PRPF40A-211ENST00000493468 TRAV1-1A0A0B4J248 108 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 BCL2P10415 239 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 Q5BKY6 102 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 TMUB2Q71RG4 321 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 GATD1Q8NB37 220 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 TSKUQ8WUA8 353 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 BTF3L4Q96K17 158 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 ALG5Q9Y673 324 aa8.55□□□□□ -1.04
PRPF40A-211ENST00000493468 XKRY2A2RUG3 117 aa8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 C19orf71A6NCJ1 209 aa8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 RPL35P42766 123 aaKnown RBP8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 MEF2BQ02080 365 aaPredicted RBP8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 SS18Q15532 418 aa8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 TMEM101Q96IK0 257 aa8.54□□□□□ -1.04
PRPF40A-211ENST00000493468 UBE2D1P51668 147 aa8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 EIF5AP63241 154 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 EIF5AL1Q6IS14 154 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 LYZL1Q6UWQ5 148 aa8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 MBD3L1Q8WWY6 194 aa8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 C2orf48Q96LS8 159 aa8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 CNFNQ9BYD5 112 aa8.53□□□□□ -1.04
PRPF40A-211ENST00000493468 GIPP09681 153 aaPredicted RBP8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 CTRLP40313 264 aa8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 RPL18AQ02543 176 aaKnown RBP8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 C11orf52Q96A22 123 aa8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 SMIM12Q96EX1 92 aa8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 CAMK2N2Q96S95 79 aa8.52□□□□□ -1.05
PRPF40A-211ENST00000493468 FXYD6-FXYD2A0A087WZ82 144 aa8.51□□□□□ -1.05
PRPF40A-211ENST00000493468 RNF151Q2KHN1 245 aa8.51□□□□□ -1.05
PRPF40A-211ENST00000493468 C9orf62Q8N4C0 152 aa8.51□□□□□ -1.05
PRPF40A-211ENST00000493468 SFT2D1Q8WV19 159 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms