RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 LBHQ53QV2 105 aaPredicted RBP3.88□□□□□ -1.79
COL17A1-206ENST00000483876 FAM74A4Q5TZK3 123 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 C2orf66Q6UXQ4 117 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 OR4C5Q8NGB2 326 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 SCGB3A1Q96QR1 104 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 TIMM17AQ99595 171 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 PRO1933Q9H354 126 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 UQCR10Q9UDW1 63 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 CYSLTR1Q9Y271 337 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 TNFRSF18Q9Y5U5 241 aa3.88□□□□□ -1.79
COL17A1-206ENST00000483876 A0A087WX48 190 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 IGIPA6NJ69 53 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 PRM2P04554 102 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 RPL35AP18077 110 aaKnown RBP3.87□□□□□ -1.79
COL17A1-206ENST00000483876 ODF1Q14990 250 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 PAPPA-AS1Q5QFB9 102 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 Q6ZN92 141 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 LINC00612Q8N6U2 182 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 NEXN-AS1Q8NBZ9 246 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 PMCHL2Q9BQD1 86 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 HHLA3Q9XRX5 114 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 MRPS16Q9Y3D3 137 aaKnown RBP3.87□□□□□ -1.79
COL17A1-206ENST00000483876 PAM16Q9Y3D7 125 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 PYGO1Q9Y3Y4 419 aa3.87□□□□□ -1.79
COL17A1-206ENST00000483876 TRBV7-3A0A075B6L6 115 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 IGHV3OR16-12A0A075B7B8 117 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 TRGV1A0A0A0MS02 117 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 TRBV6-4A0A1B0GX49 114 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 DLEU1O43261 78 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 DPM2O94777 84 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 TSHBP01222 138 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 P0DMU3 169 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 FAM231AP0DMU4 169 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 FAM231CP0DMU5 169 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 PLNP26678 52 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 EGFEM1PQ0D2K5 195 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 Q6ZSN1 163 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 DAZ4Q86SG3 579 aaKnown RBP3.86□□□□□ -1.79
COL17A1-206ENST00000483876 C20orf203Q8NBC4 194 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 C14orf144Q96I85 54 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 WFDC10AQ9H1F0 79 aa3.86□□□□□ -1.79
COL17A1-206ENST00000483876 NOP10Q9NPE3 64 aaKnown RBP3.86□□□□□ -1.79
COL17A1-206ENST00000483876 DAZ3Q9NR90 486 aaKnown RBP3.86□□□□□ -1.79
COL17A1-206ENST00000483876 MRPL16Q9NX20 251 aaKnown RBP3.86□□□□□ -1.79
COL17A1-206ENST00000483876 PRSS29PA6NIE9 313 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 LYRM9A8MSI8 78 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 F8VRH5 84 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 SIVA1O15304 175 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 IGKCP01834 107 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 PMVKQ15126 192 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 Q6ZTI0 123 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 ATOH7Q8N100 152 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 ZNF479Q96JC4 524 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 TIMM21Q9BVV7 248 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 GTSF1LQ9H1H1 148 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 CST9LQ9H4G1 147 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 DKK2Q9UBU2 259 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 X6R8D5 127 aa3.85□□□□□ -1.79
COL17A1-206ENST00000483876 TRGV2A0A075B6R0 118 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 IGHV3-73A0A0B4J1V6 119 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 H0Y8G0 127 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 H7C423 109 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 K7EQD1 137 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 M0R143 59 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 COX8AP10176 69 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 MIFP14174 115 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 RPL36AP83881 106 aaKnown RBP3.84□□□□□ -1.79
COL17A1-206ENST00000483876 SMAGPQ0VAQ4 97 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 COTL1Q14019 142 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 MAJINQ3KP22 176 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 TMEM97Q5BJF2 176 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 SLC25A34Q6PIV7 304 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 BOD1L2Q8IYS8 172 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 SLC25A29Q8N8R3 303 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 BAALCQ8WXS3 180 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 RPL36ALQ969Q0 106 aaKnown RBP3.84□□□□□ -1.79
COL17A1-206ENST00000483876 RNF183Q96D59 192 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 SPANXA1Q9NS26 97 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 TP53TG1Q9Y2A0 90 aa3.84□□□□□ -1.79
COL17A1-206ENST00000483876 CHTOPQ9Y3Y2 248 aaKnown RBP3.84□□□□□ -1.79
COL17A1-206ENST00000483876 CSDC2Q9Y534 153 aaKnown RBP3.84□□□□□ -1.79
COL17A1-206ENST00000483876 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 KRTAP9-6A0A140TA67 174 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 TEX48A0A1B0GUV7 120 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 hDV102S1A0JD36 115 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 LY6G6CO95867 125 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 IGHV4-30-4P0DP06 118 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 UBE2D3P61077 147 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 UBE2D2P62837 147 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 MRPS36P82909 103 aaKnown RBP3.83□□□□□ -1.8
COL17A1-206ENST00000483876 FHL2Q14192 279 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 NEGR1Q7Z3B1 354 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 STPG4Q8N801 248 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 ZNRF2Q8NHG8 242 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 LINC00476Q8WZB0 136 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 AMELXQ99217 191 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 PRADC1Q9BSG0 188 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 CHCHD7Q9BUK0 85 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 KRTAP4-6Q9BYQ5 205 aa3.83□□□□□ -1.8
COL17A1-206ENST00000483876 VCX2Q9H322 139 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms