RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 H3BUT2 72 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 M0QY20 66 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 SPRY2O43597 315 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 CRYBA4P53673 196 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 LINC00315P59091 139 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 SRSF9Q13242 221 aaKnown RBP eCLIP4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 DEFB114Q30KQ6 69 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 AMMECR1LQ6DCA0 310 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 AMTNQ6UX39 209 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 Q6ZSV7 163 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 DLX4Q92988 240 aaPredicted RBP4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 DNAJC30Q96LL9 226 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 PRADC1Q9BSG0 188 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 VCX2Q9H322 139 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 TP73-AS1Q9UF72 201 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 ADGRG4Q8IZF6 3080 aa4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 SPENQ96T58 3664 aaKnown RBP4.31□□□□□ -1.72
ATPAF1-204ENST00000474020 HRNRQ86YZ3 2850 aaPredicted RBP4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CSMD1Q96PZ7 3565 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 IGKV2D-26A0A0A0MRZ7 120 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 A0A1W2PPM0 123 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 KRTAP29-1A8MX34 341 aaPredicted RBP4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 K7EP13 123 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 K7EP34 96 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 K7ERU9 68 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CCL24O00175 119 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CCL25O15444 150 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CRYGDP07320 174 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CD28P10747 220 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 TMEM170BQ5T4T1 132 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 NEGR1Q7Z3B1 354 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 WFDC11Q8NEX6 87 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 RAB37Q96AX2 223 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 PLEKHB2Q96CS7 222 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 TM2D2Q9BX73 214 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 C1QTNF4Q9BXJ3 329 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 JPT2Q9H910 190 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 NHP2Q9NX24 153 aaKnown RBP4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 SPCS1Q9Y6A9 102 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 CRYBG3Q68DQ2 2970 aa4.3□□□□□ -1.72
ATPAF1-204ENST00000474020 PDZD2O15018 2839 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 PRRC2AP48634 2157 aaKnown RBP4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 IGIPA6NJ69 53 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 COTL1Q14019 142 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 HIST2H2BCQ6DN03 193 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 C18orf65Q6ZTR6 163 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 Q6ZVH6 145 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 C20orf203Q8NBC4 194 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 C16orf95Q9H693 158 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 SPANXA1Q9NS26 97 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 CELSR2Q9HCU4 2923 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 BSNQ9UPA5 3926 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 MTORP42345 2549 aa4.29□□□□□ -1.72
ATPAF1-204ENST00000474020 TMEM238C9JI98 176 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 J3QR89 54 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 LEPROTO15243 131 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 CIDEAO60543 219 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 SAP30O75446 220 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 NDUFA7O95182 113 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 TSHBP01222 138 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 RPL39P62891 51 aaKnown RBP4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 FHL3Q13643 280 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 DGAT2L7PQ6IED9 249 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 MORN3Q6PF18 240 aaPredicted RBP4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 NFE4Q86UQ8 179 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 ZNF479Q96JC4 524 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 PYGO1Q9Y3Y4 419 aa4.28□□□□□ -1.72
ATPAF1-204ENST00000474020 IGHV3OR16-12A0A075B7B8 117 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 IGHV3-73A0A0B4J1V6 119 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 TRBV10-1A0A0K0K1A3 114 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 RS1O15537 224 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 IGHV3-53P01767 116 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 AZU1P20160 251 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 FXYD2P54710 66 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 RPL24P83731 157 aaKnown RBP4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 RPL36AP83881 106 aaKnown RBP4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 RRN3P1Q2M238 152 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 C12orf74Q32Q52 190 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 LCE1AQ5T7P2 110 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 CFAP126Q5VTH2 177 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 MAPKAPK5-AS1Q8N8E1 139 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 FAM110AQ9BQ89 295 aa4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 GEMIN7Q9H840 131 aaKnown RBP4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 MRPL16Q9NX20 251 aaKnown RBP4.27□□□□□ -1.73
ATPAF1-204ENST00000474020 IGLV4-69A0A075B6H9 119 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 TRBV7-3A0A075B6L6 115 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 TRGV1A0A0A0MS02 117 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1BA6NDE4 496 aaKnown RBP4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1EA6NEQ0 496 aaKnown RBP4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 J3QQQ9 107 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 IGKV2-30P06310 120 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 RBMY1DP0C7P1 496 aaKnown RBP4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 HILS1P60008 231 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 OCIAD2Q56VL3 154 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 C11orf44Q8N8P7 122 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 TMEM263Q8WUH6 116 aaKnown RBP4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 COPS9Q8WXC6 57 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 C16orf74Q96GX8 76 aa4.26□□□□□ -1.73
ATPAF1-204ENST00000474020 CITED2Q99967 270 aaPredicted RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms