RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 CST9LP1Q5W188 147 aa11.17□□□□□ -0.62
SHH-205ENST00000472308 PKIGQ9Y2B9 76 aa11.17□□□□□ -0.62
SHH-205ENST00000472308 A0A1W2PNN7 141 aa11.16□□□□□ -0.62
SHH-205ENST00000472308 MAP1LC3B2A6NCE7 125 aa11.16□□□□□ -0.62
SHH-205ENST00000472308 PTTG1IPP53801 180 aa11.16□□□□□ -0.62
SHH-205ENST00000472308 STOML3Q8TAV4 291 aa11.16□□□□□ -0.62
SHH-205ENST00000472308 MAP1LC3BQ9GZQ8 125 aa11.16□□□□□ -0.62
SHH-205ENST00000472308 COTL1Q14019 142 aa11.15□□□□□ -0.62
SHH-205ENST00000472308 MED28Q9H204 178 aa11.15□□□□□ -0.62
SHH-205ENST00000472308 NIT2Q9NQR4 276 aa11.15□□□□□ -0.62
SHH-205ENST00000472308 IGLC6P0CF74 106 aa11.14□□□□□ -0.63
SHH-205ENST00000472308 PRR4Q16378 134 aa11.14□□□□□ -0.63
SHH-205ENST00000472308 SCO2A0A1W2PP80 73 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 MT-ND6P03923 174 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 Q5BKY6 102 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 LINC00299Q6ZSB3 139 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 BAGE2Q86Y30 109 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 S100ZQ8WXG8 99 aa11.13□□□□□ -0.63
SHH-205ENST00000472308 PAGE4O60829 102 aa11.12□□□□□ -0.63
SHH-205ENST00000472308 XCL1P47992 114 aa11.12□□□□□ -0.63
SHH-205ENST00000472308 C1orf137Q5JT78 98 aa11.12□□□□□ -0.63
SHH-205ENST00000472308 AKR1C8PQ5T2L2 129 aa11.12□□□□□ -0.63
SHH-205ENST00000472308 TPPP3Q9BW30 176 aa11.12□□□□□ -0.63
SHH-205ENST00000472308 IGHV1-58A0A0C4DH39 117 aa11.11□□□□□ -0.63
SHH-205ENST00000472308 S100A9P06702 114 aaKnown RBP11.11□□□□□ -0.63
SHH-205ENST00000472308 SYCNQ0VAF6 134 aa11.11□□□□□ -0.63
SHH-205ENST00000472308 GAGE2BQ13066 116 aa11.11□□□□□ -0.63
SHH-205ENST00000472308 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.1□□□□□ -0.63
SHH-205ENST00000472308 IGKV2-29A2NJV5 120 aaPredicted RBP11.1□□□□□ -0.63
SHH-205ENST00000472308 NTF3P20783 257 aa11.1□□□□□ -0.63
SHH-205ENST00000472308 AMMECR1LQ6DCA0 310 aa11.1□□□□□ -0.63
SHH-205ENST00000472308 Q6ZNX1 250 aa11.1□□□□□ -0.63
SHH-205ENST00000472308 FER1L6-AS1Q8NA97 138 aa11.1□□□□□ -0.63
SHH-205ENST00000472308 BORCS7-ASMTA0A0B4J1R7 106 aa11.09□□□□□ -0.63
SHH-205ENST00000472308 LOC107984640A0A0U1RRK4 108 aa11.08□□□□□ -0.64
SHH-205ENST00000472308 CCL25O15444 150 aa11.08□□□□□ -0.64
SHH-205ENST00000472308 KRTAP1-4P0C5Y4 121 aa11.08□□□□□ -0.64
SHH-205ENST00000472308 FGF6P10767 208 aa11.08□□□□□ -0.64
SHH-205ENST00000472308 C9orf116Q5BN46 136 aaPredicted RBP11.08□□□□□ -0.64
SHH-205ENST00000472308 RNASEKQ6P5S7 137 aaKnown RBP11.08□□□□□ -0.64
SHH-205ENST00000472308 PHF5AQ7RTV0 110 aaKnown RBP11.08□□□□□ -0.64
SHH-205ENST00000472308 DIRC1Q969H9 104 aa11.08□□□□□ -0.64
SHH-205ENST00000472308 H0Y9J4 135 aa11.07□□□□□ -0.64
SHH-205ENST00000472308 IGLV7-43P04211 117 aa11.07□□□□□ -0.64
SHH-205ENST00000472308 BCL2P10415 239 aa11.07□□□□□ -0.64
SHH-205ENST00000472308 OR5A1Q8NGJ0 315 aa11.07□□□□□ -0.64
SHH-205ENST00000472308 LINC00959A0A1B0GUT2 108 aa11.06□□□□□ -0.64
SHH-205ENST00000472308 CAMPP49913 170 aa11.06□□□□□ -0.64
SHH-205ENST00000472308 ALG5Q9Y673 324 aa11.06□□□□□ -0.64
SHH-205ENST00000472308 IGLV1-50A0A075B6I6 118 aa11.05□□□□□ -0.64
SHH-205ENST00000472308 H7C423 109 aa11.05□□□□□ -0.64
SHH-205ENST00000472308 ZNF561-AS1K7EIQ3 104 aa11.05□□□□□ -0.64
SHH-205ENST00000472308 NDUFA13Q9P0J0 144 aa11.05□□□□□ -0.64
SHH-205ENST00000472308 MUC17Q685J3 4493 aa11.04□□□□□ -0.64
SHH-205ENST00000472308 TRGC1P0CF51 173 aa11.04□□□□□ -0.64
SHH-205ENST00000472308 KRTAP11-1Q8IUC1 163 aa11.04□□□□□ -0.64
SHH-205ENST00000472308 GATD1Q8NB37 220 aa11.04□□□□□ -0.64
SHH-205ENST00000472308 OR2D3Q8NGH3 330 aa11.04□□□□□ -0.64
SHH-205ENST00000472308 IGLV4-69A0A075B6H9 119 aa11.03□□□□□ -0.64
SHH-205ENST00000472308 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.03□□□□□ -0.64
SHH-205ENST00000472308 NCR2O95944 276 aa11.03□□□□□ -0.64
SHH-205ENST00000472308 RPL35P42766 123 aaKnown RBP11.03□□□□□ -0.64
SHH-205ENST00000472308 MEF2BQ02080 365 aaPredicted RBP11.03□□□□□ -0.64
SHH-205ENST00000472308 TMUB2Q71RG4 321 aa11.03□□□□□ -0.64
SHH-205ENST00000472308 NUP35Q8NFH5 326 aa11.03□□□□□ -0.64
SHH-205ENST00000472308 C19orf71A6NCJ1 209 aa11.02□□□□□ -0.65
SHH-205ENST00000472308 APOMO95445 188 aa11.02□□□□□ -0.65
SHH-205ENST00000472308 APCSP02743 223 aa11.02□□□□□ -0.65
SHH-205ENST00000472308 ZNF25P17030 456 aaPredicted RBP11.02□□□□□ -0.65
SHH-205ENST00000472308 LYZL1Q6UWQ5 148 aa11.02□□□□□ -0.65
SHH-205ENST00000472308 RPL39LQ96EH5 51 aaKnown RBP11.02□□□□□ -0.65
SHH-205ENST00000472308 A0A1B0GV50 99 aa11.01□□□□□ -0.65
SHH-205ENST00000472308 F2Z2F3 143 aa11.01□□□□□ -0.65
SHH-205ENST00000472308 DEFA1P59665 94 aa11.01□□□□□ -0.65
SHH-205ENST00000472308 RPS20P60866 119 aaKnown RBP11.01□□□□□ -0.65
SHH-205ENST00000472308 CD164L2Q6UWJ8 174 aa11.01□□□□□ -0.65
SHH-205ENST00000472308 CYTL1Q9NRR1 136 aa11.01□□□□□ -0.65
SHH-205ENST00000472308 FXYD6-FXYD2A0A087WZ82 144 aa11□□□□□ -0.65
SHH-205ENST00000472308 PFDN1O60925 122 aa11□□□□□ -0.65
SHH-205ENST00000472308 ISOC2Q96AB3 205 aa11□□□□□ -0.65
SHH-205ENST00000472308 RPL18AQ02543 176 aaKnown RBP10.99□□□□□ -0.65
SHH-205ENST00000472308 SFT2D1Q8WV19 159 aa10.99□□□□□ -0.65
SHH-205ENST00000472308 CTRLP40313 264 aa10.98□□□□□ -0.65
SHH-205ENST00000472308 CENPWQ5EE01 88 aa10.98□□□□□ -0.65
SHH-205ENST00000472308 MBD3L1Q8WWY6 194 aa10.98□□□□□ -0.65
SHH-205ENST00000472308 GIPP09681 153 aaPredicted RBP10.97□□□□□ -0.65
SHH-205ENST00000472308 EIF5AP63241 154 aaKnown RBP10.97□□□□□ -0.65
SHH-205ENST00000472308 SS18Q15532 418 aa10.97□□□□□ -0.65
SHH-205ENST00000472308 BTF3L4Q96K17 158 aa10.97□□□□□ -0.65
SHH-205ENST00000472308 CAMK2N2Q96S95 79 aa10.97□□□□□ -0.65
SHH-205ENST00000472308 A0A087WZ39 114 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 SDHAF1A6NFY7 115 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 UBE2D1P51668 147 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 C9orf62Q8N4C0 152 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 C11orf52Q96A22 123 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 TMEM101Q96IK0 257 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 CNFNQ9BYD5 112 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 CDC42SE2Q9NRR3 84 aa10.96□□□□□ -0.65
SHH-205ENST00000472308 FAM168BA1KXE4 195 aa10.95□□□□□ -0.66
SHH-205ENST00000472308 BCL2L11O43521 198 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms