RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 ATP6V0E2Q8NHE4 81 aa13.39□□□□□ -0.27
RPS28-202ENST00000449223 PACRGQ96M98 296 aaPredicted RBP13.39□□□□□ -0.27
RPS28-202ENST00000449223 A0A096LNJ9 63 aa13.39□□□□□ -0.27
RPS28-202ENST00000449223 TMEM97Q5BJF2 176 aa13.39□□□□□ -0.27
RPS28-202ENST00000449223 HIST3H2BBQ8N257 126 aa13.39□□□□□ -0.27
RPS28-202ENST00000449223 IGHV1-24A0A0C4DH33 117 aa13.38□□□□□ -0.27
RPS28-202ENST00000449223 IGHV3-38A0A0C4DH36 116 aa13.38□□□□□ -0.27
RPS28-202ENST00000449223 FCER1GP30273 86 aa13.38□□□□□ -0.27
RPS28-202ENST00000449223 NTM-AS1Q6ZSK4 140 aa13.37□□□□□ -0.27
RPS28-202ENST00000449223 C15orf53Q8NAA6 179 aa13.37□□□□□ -0.27
RPS28-202ENST00000449223 G0S2P27469 103 aa13.36□□□□□ -0.27
RPS28-202ENST00000449223 TIRAPP58753 221 aa13.36□□□□□ -0.27
RPS28-202ENST00000449223 TGP01266 2768 aa13.36□□□□□ -0.27
RPS28-202ENST00000449223 LINC01549A6NIU2 74 aa13.35□□□□□ -0.27
RPS28-202ENST00000449223 HBDP02042 147 aa13.35□□□□□ -0.27
RPS28-202ENST00000449223 AMTP48728 403 aa13.35□□□□□ -0.27
RPS28-202ENST00000449223 CHCHD7Q9BUK0 85 aa13.35□□□□□ -0.27
RPS28-202ENST00000449223 DNAH7Q8WXX0 4024 aa13.35□□□□□ -0.27
RPS28-202ENST00000449223 TRBV6-8A0A0A6YYG3 113 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 FAM19A2Q8N3H0 131 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 C20orf203Q8NBC4 194 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 CSMD3Q7Z407 3707 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 NUDT3O95989 172 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 PMCHL1Q16048 86 aa13.34□□□□□ -0.27
RPS28-202ENST00000449223 IFITM10A6NMD0 228 aa13.33□□□□□ -0.28
RPS28-202ENST00000449223 PDZD11Q5EBL8 140 aa13.33□□□□□ -0.28
RPS28-202ENST00000449223 TMEM18Q96B42 140 aa13.33□□□□□ -0.28
RPS28-202ENST00000449223 TOMM6Q96B49 74 aa13.33□□□□□ -0.28
RPS28-202ENST00000449223 TRBV25-1A0A075B6N4 114 aa13.32□□□□□ -0.28
RPS28-202ENST00000449223 NUPR2A6NF83 97 aa13.32□□□□□ -0.28
RPS28-202ENST00000449223 CEMP1Q6PRD7 247 aaPredicted RBP13.32□□□□□ -0.28
RPS28-202ENST00000449223 C2orf66Q6UXQ4 117 aa13.32□□□□□ -0.28
RPS28-202ENST00000449223 DEFB104AQ8WTQ1 72 aa13.32□□□□□ -0.28
RPS28-202ENST00000449223 HIST1H2BLQ99880 126 aa13.32□□□□□ -0.28
RPS28-202ENST00000449223 DYNC2H1Q8NCM8 4307 aaKnown RBP13.31□□□□□ -0.28
RPS28-202ENST00000449223 S100A2P29034 98 aa13.31□□□□□ -0.28
RPS28-202ENST00000449223 CYSLTR1Q9Y271 337 aa13.31□□□□□ -0.28
RPS28-202ENST00000449223 H7C423 109 aa13.3□□□□□ -0.28
RPS28-202ENST00000449223 BTF3P20290 206 aaKnown RBP13.3□□□□□ -0.28
RPS28-202ENST00000449223 LYPD5Q6UWN5 251 aa13.29□□□□□ -0.28
RPS28-202ENST00000449223 IGLL5B9A064 214 aa13.29□□□□□ -0.28
RPS28-202ENST00000449223 LEPROTL1O95214 131 aa13.29□□□□□ -0.28
RPS28-202ENST00000449223 LELP1Q5T871 98 aa13.29□□□□□ -0.28
RPS28-202ENST00000449223 TMEM243Q9BU79 118 aa13.29□□□□□ -0.28
RPS28-202ENST00000449223 TCTAP57738 103 aa13.28□□□□□ -0.28
RPS28-202ENST00000449223 RPL39P62891 51 aaKnown RBP13.28□□□□□ -0.28
RPS28-202ENST00000449223 MRPL52Q86TS9 123 aaKnown RBP13.28□□□□□ -0.28
RPS28-202ENST00000449223 TIMM21Q9BVV7 248 aa13.28□□□□□ -0.28
RPS28-202ENST00000449223 PYGO1Q9Y3Y4 419 aa13.28□□□□□ -0.28
RPS28-202ENST00000449223 NPSP0C0P6 89 aa13.27□□□□□ -0.29
RPS28-202ENST00000449223 FABP4P15090 132 aa13.27□□□□□ -0.29
RPS28-202ENST00000449223 ERASQ7Z444 233 aa13.27□□□□□ -0.29
RPS28-202ENST00000449223 TIMM17AQ99595 171 aa13.27□□□□□ -0.29
RPS28-202ENST00000449223 HSPB8Q9UJY1 196 aa13.27□□□□□ -0.29
RPS28-202ENST00000449223 KLK5Q9Y337 293 aaPredicted RBP13.27□□□□□ -0.29
RPS28-202ENST00000449223 IGIPA6NJ69 53 aa13.26□□□□□ -0.29
RPS28-202ENST00000449223 UBE2D4Q9Y2X8 147 aa13.26□□□□□ -0.29
RPS28-202ENST00000449223 CSDC2Q9Y534 153 aaKnown RBP13.26□□□□□ -0.29
RPS28-202ENST00000449223 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.25□□□□□ -0.29
RPS28-202ENST00000449223 IGKV2-29A2NJV5 120 aaPredicted RBP13.25□□□□□ -0.29
RPS28-202ENST00000449223 ATP5LO75964 103 aa13.25□□□□□ -0.29
RPS28-202ENST00000449223 ESRGQ1W209 222 aa13.25□□□□□ -0.29
RPS28-202ENST00000449223 WWC2-AS2Q96NR7 200 aa13.25□□□□□ -0.29
RPS28-202ENST00000449223 SPANXA1Q9NS26 97 aa13.25□□□□□ -0.29
RPS28-202ENST00000449223 SMAGPQ0VAQ4 97 aa13.24□□□□□ -0.29
RPS28-202ENST00000449223 APLNQ9ULZ1 77 aa13.24□□□□□ -0.29
RPS28-202ENST00000449223 ZNF25P17030 456 aaPredicted RBP13.23□□□□□ -0.29
RPS28-202ENST00000449223 TMEM141Q96I45 108 aa13.23□□□□□ -0.29
RPS28-202ENST00000449223 SCGB3A1Q96QR1 104 aa13.23□□□□□ -0.29
RPS28-202ENST00000449223 FGF6P10767 208 aa13.23□□□□□ -0.29
RPS28-202ENST00000449223 LINC00173Q6ZV60 143 aa13.23□□□□□ -0.29
RPS28-202ENST00000449223 MUC7Q8TAX7 377 aa13.23□□□□□ -0.29
RPS28-202ENST00000449223 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.22□□□□□ -0.29
RPS28-202ENST00000449223 UBE2L6O14933 153 aa13.22□□□□□ -0.29
RPS28-202ENST00000449223 PKIAP61925 76 aa13.22□□□□□ -0.29
RPS28-202ENST00000449223 IFI27L1Q96BM0 104 aa13.22□□□□□ -0.29
RPS28-202ENST00000449223 CHCHD5Q9BSY4 110 aa13.22□□□□□ -0.29
RPS28-202ENST00000449223 A0A1B0GUV1 79 aa13.21□□□□□ -0.29
RPS28-202ENST00000449223 MRPS36P82909 103 aaKnown RBP13.21□□□□□ -0.29
RPS28-202ENST00000449223 FAM104AQ969W3 186 aa13.21□□□□□ -0.29
RPS28-202ENST00000449223 STARD9Q9P2P6 4700 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 IGLV4-3A0A075B6K6 122 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 TRAV8-6A0A0B4J262 113 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 LOC105371267A0A1B0GV96 52 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 PAPPA-AS1Q5QFB9 102 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 SPATA12Q7Z6I5 190 aa13.19□□□□□ -0.3
RPS28-202ENST00000449223 MRPS16Q9Y3D3 137 aaKnown RBP13.19□□□□□ -0.3
RPS28-202ENST00000449223 C3orf79P0CE67 100 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 CCL18P55774 89 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 GAGE6Q13070 117 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 UPK3BQ9BT76 320 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 MAP1LC3CQ9BXW4 147 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 AMMECR1LQ6DCA0 310 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 OR10D4PQ8NGN7 298 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 LINC00588Q9Y4M8 146 aa13.18□□□□□ -0.3
RPS28-202ENST00000449223 TENM2Q9NT68 2774 aa13.17□□□□□ -0.3
RPS28-202ENST00000449223 SYS1-DBNDD2H3BUS1 97 aa13.17□□□□□ -0.3
RPS28-202ENST00000449223 BAALCQ8WXS3 180 aa13.17□□□□□ -0.3
RPS28-202ENST00000449223 AMELXQ99217 191 aa13.17□□□□□ -0.3
RPS28-202ENST00000449223 CDC42SE2Q9NRR3 84 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms