RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 RASL11AQ6T310 242 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 Q6ZTI0 123 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 LINC00612Q8N6U2 182 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 NRACQ8N912 160 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 RASL10AQ92737 203 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 BORCS7Q96B45 105 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 SPXQ9BT56 116 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 GNB1LQ9BYB4 327 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 TMEM191AQ9H0A3 160 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 NOP10Q9NPE3 64 aaKnown RBP3.31□□□□□ -1.88
PTPN4-206ENST00000441089 CELA1Q9UNI1 258 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 TRAPPC1Q9Y5R8 145 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 DEFB131BA0A096LNP1 70 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 TRGV1A0A0A0MS02 117 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 TRAV26-2A0A0B4J265 109 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 A0A1B0GW15 77 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 SMKR1H3BMG3 65 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 RS1O15537 224 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 GAGE7O76087 117 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 NCR2O95944 276 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 HLA-DQA1P01909 254 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 APCSP02743 223 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 TRGC1P0CF51 173 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 GAGE12FP0CL80 117 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 GAGE12GP0CL81 117 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 GAGE12IP0CL82 117 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 MIFP14174 115 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 GATA1P15976 413 aaPredicted RBP3.3□□□□□ -1.88
PTPN4-206ENST00000441089 EMP1P54849 157 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 RAB4BP61018 213 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 ZNF876PQ49A33 203 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 COX19Q49B96 90 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 MRPL51Q4U2R6 128 aaKnown RBP3.3□□□□□ -1.88
PTPN4-206ENST00000441089 PIK3CD-AS1Q5SR53 167 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 FAM222AQ5U5X8 452 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 CFAP126Q5VTH2 177 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 FAM104BQ5XKR9 115 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 Q6ZTC4 211 aa3.3□□□□□ -1.88
PTPN4-206ENST00000441089 C14orf178Q8N769 122 aaPredicted RBP3.3□□□□□ -1.88
PTPN4-206ENST00000441089 LRP1Q07954 4544 aaKnown RBP3.29□□□□□ -1.88
PTPN4-206ENST00000441089 IGHV3-73A0A0B4J1V6 119 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 D6R8Y8 96 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 NPYP01303 97 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 IGHV3-53P01767 116 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 SMR3BP02814 79 aaPredicted RBP3.29□□□□□ -1.88
PTPN4-206ENST00000441089 MT-ND6P03923 174 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 S100A8P05109 93 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 MGPP08493 103 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 BTF3P20290 206 aaKnown RBP3.29□□□□□ -1.88
PTPN4-206ENST00000441089 IQCJQ1A5X6 159 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 FAM74A4Q5TZK3 123 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 DEFB104AQ8WTQ1 72 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 ZNF479Q96JC4 524 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 AP1S3Q96PC3 154 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 ALKBH7Q9BT30 221 aaPredicted RBP3.29□□□□□ -1.88
PTPN4-206ENST00000441089 DPH3P1Q9H4G8 78 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 Q9UF83 564 aa3.29□□□□□ -1.88
PTPN4-206ENST00000441089 TRAV4A0A0B4J268 109 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 NBDYA0A0U1RRE5 68 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 LYRM9A8MSI8 78 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 A8MWV9 139 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BKO60814 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 OXTP01178 125 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BJP06899 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 DEFB130BP0DP73 79 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 DEFB130AP0DP74 79 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BOP23527 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 SRIP30626 198 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BBP33778 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BDP58876 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BCP62807 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 ZNF56Q15929 161 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST2H2BEQ16778 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 C12orf74Q32Q52 190 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.28□□□□□ -1.88
PTPN4-206ENST00000441089 C15orf53Q8NAA6 179 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BHQ93079 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 RPL39LQ96EH5 51 aaKnown RBP3.28□□□□□ -1.88
PTPN4-206ENST00000441089 URB1-AS1Q96HZ7 61 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BNQ99877 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 HIST1H2BMQ99879 126 aa3.28□□□□□ -1.88
PTPN4-206ENST00000441089 TRGV2A0A075B6R0 118 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 LOC100131303A0A0U1RQF7 123 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 C1orf196B1AJZ1 125 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 M0QY20 66 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 RHODO00212 210 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 NUPR1O60356 82 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 SPART-AS1P0CW21 52 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 SMIM17P0DL12 118 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 CKS2P33552 79 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 ZFP2Q6ZN57 461 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 SMIM15Q7Z3B0 74 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 ORMDL3Q8N138 153 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 OR4C5Q8NGB2 326 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 MPLKIPQ8TAP9 179 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 C18orf32Q8TCD1 76 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 MRAP2Q96G30 205 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 PRELID3AQ96N28 172 aa3.27□□□□□ -1.89
PTPN4-206ENST00000441089 PRSS47A8MTI9 375 aa3.26□□□□□ -1.89
PTPN4-206ENST00000441089 TNFRSF6BO95407 300 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms