RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 NHP2Q9NX24 153 aaKnown RBP6.17□□□□□ -1.42
TMEM39A-202ENST00000438581 FAM240AA0A1B0GVK7 77 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 P0DMU3 169 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 FAM231AP0DMU4 169 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 FAM231CP0DMU5 169 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 HLA-DRB4P13762 266 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 NOP10Q9NPE3 64 aaKnown RBP6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 HLA-DRB4X5D2U9 266 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 ZNF815PA8K554 130 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 COX7CP15954 63 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 DAD1P61803 113 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 LINC00322Q6ZN03 302 aaPredicted RBP6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 A0A096LPF7 62 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 VWC2LB2RUY7 222 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 DPH3Q96FX2 82 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 U3KQE9 123 aa6.16□□□□□ -1.42
TMEM39A-202ENST00000438581 FAM236DA0A1B0GTK5 79 aa6.15□□□□□ -1.42
TMEM39A-202ENST00000438581 LY6G6DO95868 133 aa6.15□□□□□ -1.42
TMEM39A-202ENST00000438581 FAM236CP0DP71 79 aa6.15□□□□□ -1.42
TMEM39A-202ENST00000438581 C11orf68Q9H3H3 251 aaKnown RBP6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 J3QQQ9 107 aa6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 ZNF80P51504 273 aaPredicted RBP6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 Q8N8P6 123 aa6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 C4orf3Q8WVX3 66 aa6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 RASL10AQ92737 203 aa6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 SMIM2Q9BVW6 85 aa6.15□□□□□ -1.43
TMEM39A-202ENST00000438581 NUPR1O60356 82 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 COX6CP09669 75 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 KLF5Q13887 457 aaPredicted RBP6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 C9orf47Q6ZRZ4 202 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 ZFAND3Q9H8U3 227 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 E9PLD3 99 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 NHLRC4P0CG21 123 aaPredicted RBP6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 Q8N1Y9 231 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 TRBV7-7A0A0K0K1E9 115 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 APOC4P55056 127 aa6.14□□□□□ -1.43
TMEM39A-202ENST00000438581 IGLV2-8P01709 118 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 CRPP02741 224 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 HILS1P60008 231 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 RPL39LQ96EH5 51 aaKnown RBP6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 USP24Q9UPU5 2620 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 TET2Q6N021 2002 aaPredicted RBP6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 MYCNOSP40205 109 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 C9orf66Q5T8R8 295 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 C18orf65Q6ZTR6 163 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 LINC01549A6NIU2 74 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 RNASE13Q5GAN3 156 aaKnown RBP6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 A0A0J9YX75 114 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 I3L3M4 83 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 BEAN1Q3B7T3 259 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 FAM19A1Q7Z5A9 133 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 PIFOQ8TCI5 191 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 ZNF702PQ9H963 129 aa6.13□□□□□ -1.43
TMEM39A-202ENST00000438581 WDFY3Q8IZQ1 3526 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 A0A0J9YY99 117 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 ESM1Q9NQ30 184 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 DEFB4AO15263 64 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 NDUFS5O43920 106 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 RNASE1P07998 156 aaKnown RBP6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 C12orf74Q32Q52 190 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 SMAD5-AS1Q9Y6J3 95 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 C19orf71A6NCJ1 209 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 Q8N976 141 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 LINC01006Q8NI28 216 aa6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 ZNF625Q96I27 306 aaPredicted RBP6.12□□□□□ -1.43
TMEM39A-202ENST00000438581 FLNAP21333 2647 aaKnown RBP6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 PLNP26678 52 aa6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 C20orf78Q9BR46 151 aa6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 MRPL35Q9NZE8 188 aaKnown RBP6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 ITPR3Q14573 2671 aa6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 DEFB135Q30KP9 77 aa6.11□□□□□ -1.43
TMEM39A-202ENST00000438581 FRYLO94915 3013 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 K7EQG2 157 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 LINC00173Q6ZV60 143 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 PSMG3-AS1Q96PY0 264 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 CHAC1Q9BUX1 264 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 MAP6D1Q9H9H5 199 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 LINC00158P58513 81 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 DEFB114Q30KQ6 69 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 TNRC18O15417 2968 aaPredicted RBP6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 TRBV25-1A0A075B6N4 114 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 LOC107984640A0A0U1RRK4 108 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 UBE2DNLQ8IWF7 75 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 CEND1Q8N111 149 aa6.1□□□□□ -1.43
TMEM39A-202ENST00000438581 PAX4O43316 350 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 GDF5OSQ5U4N7 250 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 SPATA12Q7Z6I5 190 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 DKK2Q9UBU2 259 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 PYGO1Q9Y3Y4 419 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 WFDC2Q14508 124 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 SUMO4Q6EEV6 95 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 ATRQ13535 2644 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 TMEM243Q9BU79 118 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 TP53TG3Q9ULZ0 132 aa6.09□□□□□ -1.43
TMEM39A-202ENST00000438581 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.09□□□□□ -1.44
TMEM39A-202ENST00000438581 IGKV2-29A2NJV5 120 aaPredicted RBP6.09□□□□□ -1.44
TMEM39A-202ENST00000438581 CLPSL2Q6UWE3 100 aa6.09□□□□□ -1.44
TMEM39A-202ENST00000438581 ZNF747Q9BV97 191 aa6.09□□□□□ -1.44
TMEM39A-202ENST00000438581 TIMM21Q9BVV7 248 aa6.09□□□□□ -1.44
TMEM39A-202ENST00000438581 IGLV1-40P01703 118 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms