RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 A0A0B4J2C4 111 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 C11orf86A6NJI1 115 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 F8W735 103 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-206ENST00000405805 HIST2H2BDQ6DRA6 164 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 C20orf173Q96LM9 149 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 RETNQ9HD89 108 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 ASH1LQ9NR48 2969 aaKnown RBP9.05□□□□□ -0.96
HMGB1-206ENST00000405805 TRAV23DV6A0A075B6W5 121 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV3-53P01767 116 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 TMEM258P61165 79 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 LRRC75A-AS1Q8N1F1 130 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 DAZ1Q9NQZ3 744 aaKnown RBP9.05□□□□□ -0.96
HMGB1-206ENST00000405805 PAX4O43316 350 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 SEC61GP60059 68 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 HHLA3Q9XRX5 114 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 CRPP02741 224 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 LINC00158P58513 81 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 BAALCQ8WXS3 180 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 LINC01587Q99440 93 aa9.05□□□□□ -0.96
HMGB1-206ENST00000405805 TRBV6-1A0A0K0K1D8 114 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 CRIP2P52943 208 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-206ENST00000405805 ICOSQ9Y6W8 199 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 FAM236DA0A1B0GTK5 79 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 FAM236CP0DP71 79 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 LINC00643Q86TS7 51 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 PRIMA1Q86XR5 153 aa9.04□□□□□ -0.96
HMGB1-206ENST00000405805 C4orf26Q17RF5 130 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 COL27A1Q8IZC6 1860 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-206ENST00000405805 LY6G5BQ8NDX9 201 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 RASL10AQ92737 203 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 LAMTOR3Q9UHA4 124 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 C19orf84I3L1E1 186 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 ZNF22P17026 224 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-206ENST00000405805 PFN2P35080 140 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 U3KQK5 164 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 SMG1Q96Q15 3661 aaKnown RBP9.03□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV4-61A0A0C4DH41 118 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 SPANXCQ9NY87 97 aa9.03□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV1-69DA0A0B4J2H0 117 aa9.02□□□□□ -0.96
HMGB1-206ENST00000405805 A0A0J9YXV3 536 aa9.02□□□□□ -0.96
HMGB1-206ENST00000405805 IGHV1-69P01742 117 aa9.02□□□□□ -0.96
HMGB1-206ENST00000405805 UBE2E2Q96LR5 201 aa9.02□□□□□ -0.96
HMGB1-206ENST00000405805 ZFAND3Q9H8U3 227 aa9.02□□□□□ -0.96
HMGB1-206ENST00000405805 ACYP1P07311 99 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 DAD1P61803 113 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 CEMP1Q6PRD7 247 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-206ENST00000405805 MDFICQ9P1T7 246 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 LGALS9O00182 355 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 GHRHP01286 108 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 SUMO4Q6EEV6 95 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 A0A1W2PPR1 153 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 PRM2P04554 102 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 DEFB131AP59861 70 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 DEFB136Q30KP8 78 aa9.02□□□□□ -0.97
HMGB1-206ENST00000405805 ODF3BA8MYP8 253 aa9.01□□□□□ -0.97
HMGB1-206ENST00000405805 FBXL19-AS1Q494R0 122 aa9.01□□□□□ -0.97
HMGB1-206ENST00000405805 C5orf56Q8N8D9 126 aa9.01□□□□□ -0.97
HMGB1-206ENST00000405805 EDN2P20800 178 aa9.01□□□□□ -0.97
HMGB1-206ENST00000405805 FAM223BA6NKX1 122 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 Q6ZS46 218 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 FAM223AQ8IWN6 122 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 NRACQ8N912 160 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 SIRPDQ9H106 197 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 COX7CP15954 63 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 C10orf99Q6UWK7 81 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 UBL5Q9BZL1 73 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 IGHV7-4-1A0A0J9YVY3 117 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 NDUFA4O00483 81 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 C9orf47Q6ZRZ4 202 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 SPANXDQ9BXN6 97 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 Q9HAA7 133 aa9□□□□□ -0.97
HMGB1-206ENST00000405805 J3QLI3 93 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 P0DMU3 169 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 FAM231AP0DMU4 169 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 FAM231CP0DMU5 169 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 H3BT86 120 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 IGHV4-59P01825 116 aa8.99□□□□□ -0.97
HMGB1-206ENST00000405805 UBE2L6O14933 153 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 CLPSL1A2RUU4 121 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 MRPL55Q7Z7F7 128 aaKnown RBP8.98□□□□□ -0.97
HMGB1-206ENST00000405805 DOPEY1Q5JWR5 2465 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 USMG5Q96IX5 58 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 ZFAND2AQ8N6M9 145 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 TOMM6Q96B49 74 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 XCL2Q9UBD3 114 aa8.98□□□□□ -0.97
HMGB1-206ENST00000405805 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-206ENST00000405805 IGKV2-29A2NJV5 120 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-206ENST00000405805 COX6B1P14854 86 aa8.97□□□□□ -0.97
HMGB1-206ENST00000405805 IGHG2P01859 326 aa8.97□□□□□ -0.97
HMGB1-206ENST00000405805 LMO4P61968 165 aa8.97□□□□□ -0.97
HMGB1-206ENST00000405805 SLC25A29Q8N8R3 303 aa8.97□□□□□ -0.97
HMGB1-206ENST00000405805 C14orf132Q9NPU4 83 aa8.97□□□□□ -0.97
HMGB1-206ENST00000405805 CSMD1Q96PZ7 3565 aa8.96□□□□□ -0.97
HMGB1-206ENST00000405805 LEPROTO15243 131 aa8.96□□□□□ -0.97
HMGB1-206ENST00000405805 TRIAP1O43715 76 aa8.96□□□□□ -0.97
HMGB1-206ENST00000405805 SPTSSBQ8NFR3 76 aa8.96□□□□□ -0.97
HMGB1-206ENST00000405805 TMEM190Q8WZ59 177 aa8.96□□□□□ -0.97
HMGB1-206ENST00000405805 IGHV1OR15-1A0A075B7D0 117 aa8.96□□□□□ -0.98
HMGB1-206ENST00000405805 SMCPP49901 116 aaPredicted RBP8.96□□□□□ -0.98
HMGB1-206ENST00000405805 IGHV4-30-2A0A087WSY4 118 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms