RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 BVES-AS1Q5T3Y7 98 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 ERASQ7Z444 233 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 NEXN-AS1Q8NBZ9 246 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 WWC2-AS2Q96NR7 200 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 LINC01587Q99440 93 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 EDA2RQ9HAV5 297 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 CYSLTR1Q9Y271 337 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 LINC01549A6NIU2 74 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 F8VRH5 84 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 H7C1H1 209 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 M0R2P5 195 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 PRM2P04554 102 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 ZNF25P17030 456 aaPredicted RBP7.29□□□□□ -1.24
VPS53-202ENST00000389040 ZC2HC1BQ5TFG8 222 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 PCP2Q8IVA1 136 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 Q8NAQ8 132 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 BAALCQ8WXS3 180 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 RETNQ9HD89 108 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 NBEAL2Q6ZNJ1 2754 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 DNAH9Q9NYC9 4486 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 SIVA1O15304 175 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 PIK3CD-AS1Q5SR53 167 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 PTH2Q96A98 100 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 C16orf74Q96GX8 76 aa7.29□□□□□ -1.24
VPS53-202ENST00000389040 CHTOPQ9Y3Y2 248 aaKnown RBP7.29□□□□□ -1.24
VPS53-202ENST00000389040 COL7A1Q02388 2944 aa7.28□□□□□ -1.24
VPS53-202ENST00000389040 IGKV2D-26A0A0A0MRZ7 120 aa7.28□□□□□ -1.24
VPS53-202ENST00000389040 A8MWV9 139 aa7.28□□□□□ -1.24
VPS53-202ENST00000389040 C11orf72Q8NBR9 251 aa7.28□□□□□ -1.24
VPS53-202ENST00000389040 TMEM263Q8WUH6 116 aaKnown RBP7.28□□□□□ -1.24
VPS53-202ENST00000389040 IGHV3OR16-12A0A075B7B8 117 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 IGHV4-28A0A0C4DH34 117 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 DEFB104AQ8WTQ1 72 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 A0A0J9YWU9 116 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 IGIPA6NJ69 53 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 RHOHQ15669 191 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 UFSP1Q6NVU6 142 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 TMEM141Q96I45 108 aa7.27□□□□□ -1.25
VPS53-202ENST00000389040 IGHV3-73A0A0B4J1V6 119 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 PRSS29PA6NIE9 313 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 LYRM9A8MSI8 78 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 I3L3M4 83 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 TSHBP01222 138 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 GHRHP01286 108 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 SPART-AS1P0CW21 52 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 RPL39P62891 51 aaKnown RBP7.26□□□□□ -1.25
VPS53-202ENST00000389040 TMEM97Q5BJF2 176 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 CFAP126Q5VTH2 177 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 TIMM17AQ99595 171 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 SPXQ9BT56 116 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 COX11Q9Y6N1 276 aa7.26□□□□□ -1.25
VPS53-202ENST00000389040 HSD52Q0P140 79 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 GAGE1Q13065 139 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 RNASE8Q8TDE3 154 aaKnown RBP7.25□□□□□ -1.25
VPS53-202ENST00000389040 DAZ2Q13117 558 aaKnown RBP7.25□□□□□ -1.25
VPS53-202ENST00000389040 Q6ZVH6 145 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 C11orf45Q8TAV5 145 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 ORAOV1Q8WV07 137 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 MRPL16Q9NX20 251 aaKnown RBP7.25□□□□□ -1.25
VPS53-202ENST00000389040 TGP01266 2768 aa7.25□□□□□ -1.25
VPS53-202ENST00000389040 HUWE1Q7Z6Z7 4374 aaKnown RBP7.24□□□□□ -1.25
VPS53-202ENST00000389040 C3orf84H3BNL1 204 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 RHODO00212 210 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 AZU1P20160 251 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 SMCPP49901 116 aaPredicted RBP7.24□□□□□ -1.25
VPS53-202ENST00000389040 SEC11AP67812 179 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 PMVKQ15126 192 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 TTTY13Q9BZ97 58 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 HIGD1BQ9P298 99 aa7.24□□□□□ -1.25
VPS53-202ENST00000389040 P0DMU3 169 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 FAM231AP0DMU4 169 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 FAM231CP0DMU5 169 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 MUC7Q8TAX7 377 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 CST9LQ9H4G1 147 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 TNFRSF18Q9Y5U5 241 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 TRAV8-6A0A0B4J262 113 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 TAX1BP3O14907 124 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 RS1O15537 224 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 Q6ZSN1 163 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 C20orf203Q8NBC4 194 aa7.23□□□□□ -1.25
VPS53-202ENST00000389040 STAB2Q8WWQ8 2551 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 IGLV4-69A0A075B6H9 119 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 TRBV25-1A0A075B6N4 114 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 PLAC8L1A1L4L8 177 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 PAPPA-AS1Q5QFB9 102 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 MAPKAPK5-AS1Q8N8E1 139 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 CHAC1Q9BUX1 264 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 NACAE9PAV3 2078 aa7.22□□□□□ -1.25
VPS53-202ENST00000389040 A6NDN8 102 aa7.21□□□□□ -1.25
VPS53-202ENST00000389040 IGHV3-53P01767 116 aa7.21□□□□□ -1.25
VPS53-202ENST00000389040 NPSP0C0P6 89 aa7.21□□□□□ -1.25
VPS53-202ENST00000389040 C21orf62-AS1Q17RA5 79 aa7.21□□□□□ -1.25
VPS53-202ENST00000389040 C11orf86A6NJI1 115 aa7.21□□□□□ -1.26
VPS53-202ENST00000389040 E9PLD3 99 aa7.21□□□□□ -1.26
VPS53-202ENST00000389040 FAM222AQ5U5X8 452 aa7.21□□□□□ -1.26
VPS53-202ENST00000389040 LINC00612Q8N6U2 182 aa7.21□□□□□ -1.26
VPS53-202ENST00000389040 DNAJC30Q96LL9 226 aa7.21□□□□□ -1.26
VPS53-202ENST00000389040 TENM3Q9P273 2699 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 TRGV1A0A0A0MS02 117 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 NUPR2A6NF83 97 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms