RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ODF3Q96PU9 254 aa10.52□□□□□ -0.73
HMGA1-203ENST00000374116 MRPL35Q9NZE8 188 aaKnown RBP10.52□□□□□ -0.73
HMGA1-203ENST00000374116 SS18L2Q9UHA2 77 aa10.52□□□□□ -0.73
HMGA1-203ENST00000374116 M0R381 172 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 KRTAP10-11P60412 298 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 SNRPD3P62318 126 aaKnown RBP10.51□□□□□ -0.73
HMGA1-203ENST00000374116 DPH3P1Q9H4G8 78 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 TRAV26-2A0A0B4J265 109 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 ZNF688P0C7X2 276 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 LAGE3Q14657 143 aa10.51□□□□□ -0.73
HMGA1-203ENST00000374116 TRBV20-1A0A075B6N2 111 aa10.5□□□□□ -0.73
HMGA1-203ENST00000374116 K7EQG2 157 aa10.5□□□□□ -0.73
HMGA1-203ENST00000374116 GNRH2O43555 120 aa10.5□□□□□ -0.73
HMGA1-203ENST00000374116 Q6Q795 121 aa10.5□□□□□ -0.73
HMGA1-203ENST00000374116 DYNLRB2Q8TF09 96 aa10.5□□□□□ -0.73
HMGA1-203ENST00000374116 NXPH4O95158 308 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 RNASE3P12724 160 aaKnown RBP10.49□□□□□ -0.73
HMGA1-203ENST00000374116 FAM159AQ6UWV7 190 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 SORL1Q92673 2214 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 PRSS29PA6NIE9 313 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 F8VRH5 84 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 K7EMI3 77 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 RHODO00212 210 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 IGLV1-51P01701 117 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 NHLRC4P0CG21 123 aaPredicted RBP10.49□□□□□ -0.73
HMGA1-203ENST00000374116 DEFB114Q30KQ6 69 aa10.49□□□□□ -0.73
HMGA1-203ENST00000374116 A0A0J9YX75 114 aa10.48□□□□□ -0.73
HMGA1-203ENST00000374116 TMEM61Q8N0U2 210 aa10.48□□□□□ -0.73
HMGA1-203ENST00000374116 C14orf178Q8N769 122 aaPredicted RBP10.48□□□□□ -0.73
HMGA1-203ENST00000374116 SMIM2Q9BVW6 85 aa10.48□□□□□ -0.73
HMGA1-203ENST00000374116 H7C1H1 209 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 PPP1R17O96001 155 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 POM121L12Q8N7R1 296 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 LINC01600Q96MT4 127 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 BEAN1Q3B7T3 259 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 RASL10AQ92737 203 aa10.47□□□□□ -0.73
HMGA1-203ENST00000374116 A8MWV9 139 aa10.46□□□□□ -0.74
HMGA1-203ENST00000374116 SPRY2O43597 315 aa10.46□□□□□ -0.74
HMGA1-203ENST00000374116 DUSP14O95147 198 aaKnown RBP10.46□□□□□ -0.74
HMGA1-203ENST00000374116 SUMO2P61956 95 aaKnown RBP10.46□□□□□ -0.74
HMGA1-203ENST00000374116 AGRNO00468 2067 aa10.46□□□□□ -0.74
HMGA1-203ENST00000374116 TRAV12-3A0A0B4J271 114 aa10.45□□□□□ -0.74
HMGA1-203ENST00000374116 CD7P09564 240 aa10.45□□□□□ -0.74
HMGA1-203ENST00000374116 ORMDL2Q53FV1 153 aa10.45□□□□□ -0.74
HMGA1-203ENST00000374116 LINC01549A6NIU2 74 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 WIPF1O43516 503 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 MGPP08493 103 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE12JA6NER3 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 B5MCH6 92 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE7O76087 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE12FP0CL80 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE12GP0CL81 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE12IP0CL82 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 PSMB2P49721 201 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 EGFEM1PQ0D2K5 195 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE4Q13068 117 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 KIF25-AS1Q9Y6Z4 181 aa10.44□□□□□ -0.74
HMGA1-203ENST00000374116 DNAH3Q8TD57 4116 aa10.43□□□□□ -0.74
HMGA1-203ENST00000374116 MUC4Q99102 2169 aa10.43□□□□□ -0.74
HMGA1-203ENST00000374116 NDUFV3P56181 108 aaKnown RBP10.43□□□□□ -0.74
HMGA1-203ENST00000374116 ZNF256Q9Y2P7 627 aaPredicted RBP10.43□□□□□ -0.74
HMGA1-203ENST00000374116 RPL39LQ96EH5 51 aaKnown RBP10.42□□□□□ -0.74
HMGA1-203ENST00000374116 WFDC10AQ9H1F0 79 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 TRAV2A0A0B4J234 112 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 IGHV3-16A0A0C4DH30 117 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 LINC00315P59091 139 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 RPL32P62910 135 aaKnown RBP10.42□□□□□ -0.74
HMGA1-203ENST00000374116 ANKRD29Q8N6D5 301 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 TOMM6Q96B49 74 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 C9orf85Q96MD7 179 aa10.42□□□□□ -0.74
HMGA1-203ENST00000374116 MEGF8Q7Z7M0 2845 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 TCL1BO95988 128 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 IGKV3-20P01619 116 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE2BQ13066 116 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE2EQ4V326 116 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 KPRPQ5T749 579 aaPredicted RBP10.41□□□□□ -0.74
HMGA1-203ENST00000374116 NEXN-AS1Q8NBZ9 246 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 PTH2Q96A98 100 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 GAGE2DQ9UEU5 116 aa10.41□□□□□ -0.74
HMGA1-203ENST00000374116 TRAV12-2A0A075B6T6 113 aa10.4□□□□□ -0.74
HMGA1-203ENST00000374116 IGHV1OR15-1A0A075B7D0 117 aa10.4□□□□□ -0.74
HMGA1-203ENST00000374116 ZFP2Q6ZN57 461 aa10.4□□□□□ -0.74
HMGA1-203ENST00000374116 TNFRSF18Q9Y5U5 241 aa10.4□□□□□ -0.74
HMGA1-203ENST00000374116 LOC107984156A0A0G2JMH3 177 aa10.4□□□□□ -0.75
HMGA1-203ENST00000374116 A8MTW9 85 aa10.4□□□□□ -0.75
HMGA1-203ENST00000374116 HERV-K104P63124 156 aa10.4□□□□□ -0.75
HMGA1-203ENST00000374116 SPINK13Q1W4C9 94 aa10.4□□□□□ -0.75
HMGA1-203ENST00000374116 ARL17AQ8IVW1 177 aa10.4□□□□□ -0.75
HMGA1-203ENST00000374116 SCGB3A1Q96QR1 104 aa10.39□□□□□ -0.75
HMGA1-203ENST00000374116 PRADC1Q9BSG0 188 aa10.39□□□□□ -0.75
HMGA1-203ENST00000374116 K7EIL1 84 aa10.38□□□□□ -0.75
HMGA1-203ENST00000374116 IFITM1P13164 125 aa10.38□□□□□ -0.75
HMGA1-203ENST00000374116 MRPL23Q16540 153 aaKnown RBP10.38□□□□□ -0.75
HMGA1-203ENST00000374116 Q8N1Y9 231 aa10.38□□□□□ -0.75
HMGA1-203ENST00000374116 C10orf126Q8N4M7 172 aa10.38□□□□□ -0.75
HMGA1-203ENST00000374116 ZNF815PA8K554 130 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 SNCGO76070 127 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 SUMO4Q6EEV6 95 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 MDFICQ9P1T7 246 aa10.37□□□□□ -0.75
HMGA1-203ENST00000374116 TRGV11A0A075B6L2 103 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms