RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TRBV6-4A0A1B0GX49 114 aa11.61□□□□□ -0.55
PDLIM1-201ENST00000329399 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.61□□□□□ -0.55
PDLIM1-201ENST00000329399 CEMP1Q6PRD7 247 aaPredicted RBP11.61□□□□□ -0.55
PDLIM1-201ENST00000329399 TSTD3H0UI37 97 aa11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 NPSP0C0P6 89 aa11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 EMP1P54849 157 aa11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 PKIAP61925 76 aa11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 RPL36AP83881 106 aaKnown RBP11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 ERASQ7Z444 233 aa11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 RPL36ALQ969Q0 106 aaKnown RBP11.6□□□□□ -0.55
PDLIM1-201ENST00000329399 NACAE9PAV3 2078 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 VPS13DQ5THJ4 4388 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 IGHV3-73A0A0B4J1V6 119 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 LCE6AA0A183 80 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 GAGE12BA1L429 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 K7EQD1 137 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 GAGE7O76087 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 GAGE12FP0CL80 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 GAGE12GP0CL81 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 GAGE12IP0CL82 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 C12orf74Q32Q52 190 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 C2orf66Q6UXQ4 117 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 NEXN-AS1Q8NBZ9 246 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 TMEM141Q96I45 108 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 ZNF479Q96JC4 524 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 VAMP8Q9BV40 100 aa11.59□□□□□ -0.55
PDLIM1-201ENST00000329399 TRBV7-3A0A075B6L6 115 aa11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 Q6ZTC4 211 aa11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 LINC00173Q6ZV60 143 aa11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 DAZ4Q86SG3 579 aaKnown RBP11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 SCGB3A1Q96QR1 104 aa11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 DAZ3Q9NR90 486 aaKnown RBP11.58□□□□□ -0.56
PDLIM1-201ENST00000329399 TRAV12-1A0A0B4J245 112 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 Q6ZN92 141 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 TIMM17AQ99595 171 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 PRADC1Q9BSG0 188 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 TRAV9-2A0A087WT02 112 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 TRGV4A0A0C4DH28 118 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 PRSS1P07477 247 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 SMAGPQ0VAQ4 97 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 PAPPA-AS1Q5QFB9 102 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 Q6ZSN1 163 aa11.57□□□□□ -0.56
PDLIM1-201ENST00000329399 HSBP1L1C9JCN9 74 aa11.56□□□□□ -0.56
PDLIM1-201ENST00000329399 TSHBP01222 138 aa11.56□□□□□ -0.56
PDLIM1-201ENST00000329399 CRYBA4P53673 196 aa11.56□□□□□ -0.56
PDLIM1-201ENST00000329399 SPART-AS1P0CW21 52 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 COTL1Q14019 142 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 TMEM97Q5BJF2 176 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 SLC25A29Q8N8R3 303 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 C20orf203Q8NBC4 194 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 DKK2Q9UBU2 259 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 PYGO1Q9Y3Y4 419 aa11.55□□□□□ -0.56
PDLIM1-201ENST00000329399 NUPR2A6NF83 97 aa11.54□□□□□ -0.56
PDLIM1-201ENST00000329399 FHL2Q14192 279 aa11.54□□□□□ -0.56
PDLIM1-201ENST00000329399 FAM222AQ5U5X8 452 aa11.54□□□□□ -0.56
PDLIM1-201ENST00000329399 CDPF1Q6NVV7 123 aa11.54□□□□□ -0.56
PDLIM1-201ENST00000329399 ZNF664Q8N3J9 261 aa11.54□□□□□ -0.56
PDLIM1-201ENST00000329399 GTSF1LQ9H1H1 148 aa11.53□□□□□ -0.56
PDLIM1-201ENST00000329399 IGIPA6NJ69 53 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 P0DMU3 169 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 FAM231AP0DMU4 169 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 FAM231CP0DMU5 169 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 UBE2D3P61077 147 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 UBE2D2P62837 147 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 ZNRF2Q8NHG8 242 aa11.52□□□□□ -0.56
PDLIM1-201ENST00000329399 A0A087WX48 190 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 DEFB130BP0DP73 79 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 DEFB130AP0DP74 79 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 PLNP26678 52 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 NEGR1Q7Z3B1 354 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 PRO0255Q9UI72 69 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 HHLA3Q9XRX5 114 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 H0Y8G0 127 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 DAD1P61803 113 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 ODF1Q14990 250 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 TIMM21Q9BVV7 248 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 SPANXA1Q9NS26 97 aa11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 KLK5Q9Y337 293 aaPredicted RBP11.51□□□□□ -0.57
PDLIM1-201ENST00000329399 IGLL5B9A064 214 aa11.5□□□□□ -0.57
PDLIM1-201ENST00000329399 H7C423 109 aa11.5□□□□□ -0.57
PDLIM1-201ENST00000329399 SPATA45Q537H7 98 aa11.5□□□□□ -0.57
PDLIM1-201ENST00000329399 LINC00476Q8WZB0 136 aa11.5□□□□□ -0.57
PDLIM1-201ENST00000329399 PAM16Q9Y3D7 125 aa11.5□□□□□ -0.57
PDLIM1-201ENST00000329399 DPM2O94777 84 aa11.49□□□□□ -0.57
PDLIM1-201ENST00000329399 ATP5G1P05496 136 aa11.49□□□□□ -0.57
PDLIM1-201ENST00000329399 APLNQ9ULZ1 77 aa11.49□□□□□ -0.57
PDLIM1-201ENST00000329399 DEFB131BA0A096LNP1 70 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 TRAV10A0A0B4J240 114 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 F8VRH5 84 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 IGKCP01834 107 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 PMVKQ15126 192 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 BAALCQ8WXS3 180 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 FRAS1Q86XX4 4008 aa11.48□□□□□ -0.57
PDLIM1-201ENST00000329399 PCP4L1A6NKN8 68 aa11.47□□□□□ -0.57
PDLIM1-201ENST00000329399 LY6G6CO95867 125 aa11.47□□□□□ -0.57
PDLIM1-201ENST00000329399 SH2D6Q7Z4S9 175 aa11.47□□□□□ -0.57
PDLIM1-201ENST00000329399 CHTOPQ9Y3Y2 248 aaKnown RBP11.47□□□□□ -0.57
PDLIM1-201ENST00000329399 CHCHD7Q9BUK0 85 aa11.46□□□□□ -0.57
PDLIM1-201ENST00000329399 DNAH6Q9C0G6 4158 aa11.46□□□□□ -0.57
PDLIM1-201ENST00000329399 CSDC2Q9Y534 153 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms