RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 MDFICQ9P1T7 246 aa11.53□□□□□ -0.56
SHROOM1-201ENST00000319854 LENEPQ9Y5L5 61 aa11.53□□□□□ -0.56
SHROOM1-201ENST00000319854 ZNRF2Q8NHG8 242 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 DPH3P1Q9H4G8 78 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 A4D1N5 150 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 SNRPD3P62318 126 aaKnown RBP11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 RPL32P62910 135 aaKnown RBP11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 DEFB113Q30KQ7 82 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 Q8N1Y9 231 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 ZNF702PQ9H963 129 aa11.52□□□□□ -0.57
SHROOM1-201ENST00000319854 TMEM170BQ5T4T1 132 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 TP53TG1Q9Y2A0 90 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 A0A1W2PRX2 142 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 KNCNA6PVL3 124 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 HIVEP2P31629 2446 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 FN1P02751 2386 aaKnown RBP11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 TEX49A0A1B0GTD5 131 aa11.51□□□□□ -0.57
SHROOM1-201ENST00000319854 IGIPA6NJ69 53 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 SNCGO76070 127 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 IGHV3-33P01772 117 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 Q6YL49 198 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 WFDC11Q8NEX6 87 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 AKAP9Q99996 3911 aa11.5□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE12JA6NER3 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE7O76087 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE12FP0CL80 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE12GP0CL81 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE12IP0CL82 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 GAGE4Q13068 117 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 UNC79Q9P2D8 2635 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 IGHV3-73A0A0B4J1V6 119 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 ODF3Q96PU9 254 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 J3QLI3 93 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 K7EMT4 169 aa11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 ZNF256Q9Y2P7 627 aaPredicted RBP11.49□□□□□ -0.57
SHROOM1-201ENST00000319854 TMEM263Q8WUH6 116 aaKnown RBP11.48□□□□□ -0.57
SHROOM1-201ENST00000319854 FAM19A4Q96LR4 140 aa11.48□□□□□ -0.57
SHROOM1-201ENST00000319854 HERVK_113P61574 105 aa11.48□□□□□ -0.57
SHROOM1-201ENST00000319854 TTC32Q5I0X7 151 aa11.48□□□□□ -0.57
SHROOM1-201ENST00000319854 OPRPNQ99935 248 aaPredicted RBP11.48□□□□□ -0.57
SHROOM1-201ENST00000319854 KLLNB2CW77 178 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 IFITM1P13164 125 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 PMVKQ15126 192 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 IGHV3-64A0A075B6Q5 118 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 A0A0J9YX75 114 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 J3QQQ9 107 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 DEFB131AP59861 70 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 SETXQ7Z333 2677 aaKnown RBP11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 ZNF56Q15929 161 aa11.47□□□□□ -0.57
SHROOM1-201ENST00000319854 TRAV2A0A0B4J234 112 aa11.46□□□□□ -0.57
SHROOM1-201ENST00000319854 MUSTN1Q8IVN3 82 aa11.46□□□□□ -0.57
SHROOM1-201ENST00000319854 K7EQG2 157 aa11.46□□□□□ -0.58
SHROOM1-201ENST00000319854 LINC00315P59091 139 aa11.45□□□□□ -0.58
SHROOM1-201ENST00000319854 C15orf53Q8NAA6 179 aa11.45□□□□□ -0.58
SHROOM1-201ENST00000319854 ZNF580Q9UK33 172 aa11.45□□□□□ -0.58
SHROOM1-201ENST00000319854 SUMO4Q6EEV6 95 aa11.45□□□□□ -0.58
SHROOM1-201ENST00000319854 LINC01620Q4KN68 170 aa11.44□□□□□ -0.58
SHROOM1-201ENST00000319854 APRG1Q8IVJ8 170 aa11.44□□□□□ -0.58
SHROOM1-201ENST00000319854 TNFRSF18Q9Y5U5 241 aa11.44□□□□□ -0.58
SHROOM1-201ENST00000319854 UBE2E2Q96LR5 201 aa11.44□□□□□ -0.58
SHROOM1-201ENST00000319854 GCN1Q92616 2671 aaKnown RBP11.44□□□□□ -0.58
SHROOM1-201ENST00000319854 LGALS3P17931 250 aaKnown RBP11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 C3orf56Q8N813 242 aa11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 POLR2KP53803 58 aaKnown RBP11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 ZNF876PQ49A33 203 aa11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 TMEM61Q8N0U2 210 aa11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 KIF25-AS1Q9Y6Z4 181 aa11.43□□□□□ -0.58
SHROOM1-201ENST00000319854 PAPPA-AS1Q5QFB9 102 aa11.42□□□□□ -0.58
SHROOM1-201ENST00000319854 M0QXV9 152 aa11.42□□□□□ -0.58
SHROOM1-201ENST00000319854 Q1RN00 199 aa11.42□□□□□ -0.58
SHROOM1-201ENST00000319854 TRAV8-4A0A0B4J246 113 aa11.42□□□□□ -0.58
SHROOM1-201ENST00000319854 NBEAL2Q6ZNJ1 2754 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 IGHV3OR16-12A0A075B7B8 117 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 IGHV1OR15-1A0A075B7D0 117 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 IGHV3-16A0A0C4DH30 117 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 SDHAF1A6NFY7 115 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 P0DMU3 169 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 FAM231AP0DMU4 169 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 FAM231CP0DMU5 169 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 YAE1D1Q9NRH1 226 aa11.41□□□□□ -0.58
SHROOM1-201ENST00000319854 ADARB2-AS1A8MUL3 147 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 TRIAP1O43715 76 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 RBMY1A1P0DJD3 496 aaKnown RBP11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 RBMY1CP0DJD4 496 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 RBMY1FQ15415 496 aaKnown RBP11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 DYNLRB2Q8TF09 96 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 FSHBP01225 129 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 PROK1P58294 105 aa11.4□□□□□ -0.58
SHROOM1-201ENST00000319854 Q6ZSV7 163 aa11.4□□□□□ -0.59
SHROOM1-201ENST00000319854 ATXN8Q156A1 80 aa11.39□□□□□ -0.59
SHROOM1-201ENST00000319854 Q6Q795 121 aa11.39□□□□□ -0.59
SHROOM1-201ENST00000319854 A0A0B4J2C4 111 aa11.39□□□□□ -0.59
SHROOM1-201ENST00000319854 PDZD2O15018 2839 aa11.39□□□□□ -0.59
SHROOM1-201ENST00000319854 TMEM223A0PJW6 202 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 POM121L12Q8N7R1 296 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 TMEM141Q96I45 108 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 TIMM17AQ99595 171 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 RPL13AP40429 203 aaKnown RBP11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 MEIG1Q5JSS6 88 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 KRTAP1-3Q8IUG1 177 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms