RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 LINC01356Q8N9X3 169 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 TMEM105Q8N8V8 129 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 NYNRINQ9P2P1 1898 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 IGKV1-8A0A0C4DH67 115 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 F8WDY8 70 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 RFPL3SP0C7P2 107 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 EIF4EBP2Q13542 120 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 LY6HO94772 140 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 GP9P14770 177 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 IGLV2-18A0A075B6J9 118 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC00575Q6W349 94 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC00337Q8N6G1 96 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 COL11A1P12107 1806 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 RLFQ13129 1914 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 ZNF581Q9P0T4 197 aa5.73□□□□□ -1.49
LIMCH1-201ENST00000313860 DSCR9P59020 149 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 Q8N814 137 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 NEXN-AS1Q8NBZ9 246 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 CDIP1Q9H305 208 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 LCTP09848 1927 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 SMIM11BQ8TCY0 68 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 PLAC4Q8WY50 150 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 COX14Q96I36 57 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 A0A0D9SG42 100 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 C1orf137Q5JT78 98 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 LYPD2Q6UXB3 125 aa5.72□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC00483Q53H64 154 aa5.71□□□□□ -1.49
LIMCH1-201ENST00000313860 PHIPQ8WWQ0 1821 aa5.71□□□□□ -1.49
LIMCH1-201ENST00000313860 IGLV4-60A0A075B6I1 120 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 ZNF22P17026 224 aaPredicted RBP5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 SMIM29Q86T20 159 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 FAM19A4Q96LR4 140 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 KIAA1671Q9BY89 1806 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 SLURP1P55000 103 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 C9orf106Q8NAJ2 232 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 TRPM7Q96QT4 1865 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 A8MUN3 132 aa5.71□□□□□ -1.5
LIMCH1-201ENST00000313860 ZSWIM8A7E2V4 1837 aa5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 MBD6Q96DN6 1003 aa5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 MIR22HGQ0VDD5 57 aa5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 LOC285556D6RIA3 1793 aa5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 COX17Q14061 63 aa5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 C9orf116Q5BN46 136 aaPredicted RBP5.7□□□□□ -1.5
LIMCH1-201ENST00000313860 NTM-AS1Q6ZSK4 140 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 PSORS1C2Q9UIG4 136 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 CSRP2Q16527 193 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 TPSG1Q9NRR2 321 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 LY6G6EA0A0G2JKS1 128 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 A0A0J9YX75 114 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 MYCNOSP40205 109 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 NDUFA4L2Q9NRX3 87 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 NCKAP5O14513 1909 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 TRBV6-1A0A0K0K1D8 114 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 C20orf204Q6ZNR8 217 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 LINC01465Q8N7H1 131 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 ODF3Q96PU9 254 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 CHD3Q12873 2000 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 LY6DQ14210 128 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 C11orf45Q8TAV5 145 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 Q96MF0 132 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 BPESC1Q9GZL8 116 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 ICE1Q9Y2F5 2266 aa5.69□□□□□ -1.5
LIMCH1-201ENST00000313860 A0A087WSZ3 146 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 C9orf66Q5T8R8 295 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 CAMK2N1Q7Z7J9 78 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 NACAE9PAV3 2078 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 GREB1Q4ZG55 1949 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 IGLV2-11P01706 119 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 DOCK6Q96HP0 2047 aa5.68□□□□□ -1.5
LIMCH1-201ENST00000313860 GOLGB1Q14789 3259 aaKnown RBP5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 EPM2AB3EWF7 344 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 LINC00322Q6ZN03 302 aaPredicted RBP5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 ZNF106Q9H2Y7 1883 aaKnown RBP5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 MYO16Q9Y6X6 1858 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 SYCNQ0VAF6 134 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 LDLRAD1Q5T700 205 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 FANCMQ8IYD8 2048 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 CD164L2Q6UWJ8 174 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 PTPRDP23468 1912 aa5.67□□□□□ -1.5
LIMCH1-201ENST00000313860 IGLV2-8P01709 118 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 PLA2G2CQ5R387 149 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 C15orf65H3BRN8 121 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 UQCR11O14957 56 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 MAPKAPK5-AS1Q8N8E1 139 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 CDKN2A-AS1Q9UH64 79 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 CABIN1Q9Y6J0 2220 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 ARHGEF17Q96PE2 2063 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 MPDZO75970 2070 aa5.66□□□□□ -1.5
LIMCH1-201ENST00000313860 PLXNA4Q9HCM2 1894 aa5.65□□□□□ -1.5
LIMCH1-201ENST00000313860 ZNF575Q86XF7 245 aa5.65□□□□□ -1.5
LIMCH1-201ENST00000313860 LINC00467Q9BRT7 94 aa5.65□□□□□ -1.5
LIMCH1-201ENST00000313860 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-201ENST00000313860 EPOPA6NHQ4 379 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 IBA57-AS1B1ANH7 110 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 C6orf223Q8N319 242 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 SCN10AQ9Y5Y9 1956 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 LINC00959A0A1B0GUT2 108 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 DEFB1P60022 68 aa5.65□□□□□ -1.51
LIMCH1-201ENST00000313860 WNK2Q9Y3S1 2297 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms