RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CFC1P0CG37 223 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 SCGB1C2P0DMR2 95 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 NDUFA11Q86Y39 141 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 APRG1Q8IVJ8 170 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 IGHV4OR15-8A0A075B7B6 117 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 A0A087WW49 117 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 IGHV3-16A0A0C4DH30 117 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 IGLV1-40P01703 118 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 MED14OSP0DP75 135 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 Q9UF83 564 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 TRAV2A0A0B4J234 112 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 TMEM262E9PQX1 116 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 J3QQQ9 107 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 PPP1R17O96001 155 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 ZNF876PQ49A33 203 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 ANKRD17O75179 2603 aaKnown RBP7.43□□□□□ -1.22
LIG3-201ENST00000262327 FBN2P35556 2912 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 A0A0J9YXV3 536 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 NXPH4O95158 308 aa7.43□□□□□ -1.22
LIG3-201ENST00000262327 LGALS3P17931 250 aaKnown RBP7.43□□□□□ -1.22
LIG3-201ENST00000262327 LOC107984640A0A0U1RRK4 108 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 SMIM9A6NGZ8 99 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 M0QY20 66 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 IGHV3-30P01768 117 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 IGHV3-30-5P0DP03 117 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 DEFB112Q30KQ8 113 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 LINC01619G3V211 115 aa7.42□□□□□ -1.22
LIG3-201ENST00000262327 LINC00694P0DN24 101 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 NPC2P61916 151 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 DEFB136Q30KP8 78 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 TENM4Q6N022 2769 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 A0A0J9YX75 114 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 TRBV27A0A0K0K1C4 114 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 TRPT1Q86TN4 253 aaKnown RBP7.41□□□□□ -1.22
LIG3-201ENST00000262327 POM121L12Q8N7R1 296 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 AMELXQ99217 191 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 TMEM126AQ9H061 195 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 IGHV1OR15-1A0A075B7D0 117 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 A8MZ25 164 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 EIF4EBP3O60516 100 aaPredicted RBP7.41□□□□□ -1.22
LIG3-201ENST00000262327 FSHBP01225 129 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 ANKRD29Q8N6D5 301 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 SLC25A29Q8N8R3 303 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 DUX3Q96PT4 197 aa7.41□□□□□ -1.22
LIG3-201ENST00000262327 H3BUA1 57 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 LGALS9O00182 355 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 SNRPD3P62318 126 aaKnown RBP7.4□□□□□ -1.22
LIG3-201ENST00000262327 CFHR3Q02985 330 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 TMEM141Q96I45 108 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 C9orf85Q96MD7 179 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 TIMM17AQ99595 171 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 TEX15Q9BXT5 2789 aa7.4□□□□□ -1.22
LIG3-201ENST00000262327 TRAV8-3A0A0A6YYJ7 113 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 RBMY1A1P0DJD3 496 aaKnown RBP7.4□□□□□ -1.23
LIG3-201ENST00000262327 RBMY1CP0DJD4 496 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 PSMB8P28062 276 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 UBE2D3P61077 147 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 UBE2D2P62837 147 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 RBMY1FQ15415 496 aaKnown RBP7.4□□□□□ -1.23
LIG3-201ENST00000262327 C18orf65Q6ZTR6 163 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 WFDC11Q8NEX6 87 aa7.4□□□□□ -1.23
LIG3-201ENST00000262327 MUSTN1Q8IVN3 82 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 DNAJC30Q96LL9 226 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 A8MWV9 139 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 WIPF1O43516 503 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 MRPL23Q16540 153 aaKnown RBP7.39□□□□□ -1.23
LIG3-201ENST00000262327 PAPPA-AS1Q5QFB9 102 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 C10orf126Q8N4M7 172 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 LINC01587Q99440 93 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 SPANXA1Q9NS26 97 aa7.39□□□□□ -1.23
LIG3-201ENST00000262327 PRRC2AP48634 2157 aaKnown RBP7.39□□□□□ -1.23
LIG3-201ENST00000262327 ELANEP08246 267 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 ZNF22P17026 224 aaPredicted RBP7.38□□□□□ -1.23
LIG3-201ENST00000262327 Q1RN00 199 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 PRO1854Q9UHT4 67 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 JMJD1CQ15652 2540 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 NAV2Q8IVL1 2488 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 NF1P21359 2839 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 IGHV3-38A0A0C4DH36 116 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 PRSS2P07478 247 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 C20orf203Q8NBC4 194 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 CR1P17927 2039 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 NIPBLQ6KC79 2804 aaeCLIP7.38□□□□□ -1.23
LIG3-201ENST00000262327 IGLV4-3A0A075B6K6 122 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 K7EMT4 169 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 K7EQG2 157 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 Q6Q795 121 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 Q6ZSV7 163 aa7.38□□□□□ -1.23
LIG3-201ENST00000262327 CCDC168Q8NDH2 2452 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 TMEM223A0PJW6 202 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 C9JAW5 83 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 TRBV6-5A0A0K0K1A5 114 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 I3L3M4 83 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 CD28P10747 220 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 HOXD3P31249 432 aaPredicted RBP7.37□□□□□ -1.23
LIG3-201ENST00000262327 CHCHD5Q9BSY4 110 aa7.37□□□□□ -1.23
LIG3-201ENST00000262327 HELZ2Q9BYK8 2649 aaKnown RBP7.37□□□□□ -1.23
LIG3-201ENST00000262327 SLURP1P55000 103 aa7.36□□□□□ -1.23
LIG3-201ENST00000262327 DEFB131AP59861 70 aa7.36□□□□□ -1.23
LIG3-201ENST00000262327 Q6ZSN1 163 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms