RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PRSS47A8MTI9 375 aa6.88□□□□□ -1.31
CLN3-261ENST00000637686 RAB5BP61020 215 aa6.88□□□□□ -1.31
CLN3-261ENST00000637686 RPL32P62910 135 aaKnown RBP6.88□□□□□ -1.31
CLN3-261ENST00000637686 KMT2AQ03164 3969 aa6.88□□□□□ -1.31
CLN3-261ENST00000637686 TRBV6-5A0A0K0K1A5 114 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 TRBV6-4A0A1B0GX49 114 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 CKS2P33552 79 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 OR10J3Q5JRS4 329 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 UBE2DNLQ8IWF7 75 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.87□□□□□ -1.31
CLN3-261ENST00000637686 VSIG2Q96IQ7 327 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 DNAJC30Q96LL9 226 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 C20orf78Q9BR46 151 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 ALKBH7Q9BT30 221 aaPredicted RBP6.87□□□□□ -1.31
CLN3-261ENST00000637686 SAMD10Q9BYL1 202 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 JPT2Q9H910 190 aa6.87□□□□□ -1.31
CLN3-261ENST00000637686 A0A087WWL8 130 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 D6R8Y8 96 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 H3BNG1 76 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 M0QY20 66 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 GATA1P15976 413 aaPredicted RBP6.86□□□□□ -1.31
CLN3-261ENST00000637686 SSTP61278 116 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 Q0VG73 95 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 FHL2Q14192 279 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 FAM74A4Q5TZK3 123 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 SUMO4Q6EEV6 95 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 ZNF479Q96JC4 524 aa6.86□□□□□ -1.31
CLN3-261ENST00000637686 TRGV4A0A0C4DH28 118 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 F5H697 171 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 K7EMI3 77 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 PAX4O43316 350 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BKO60814 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BJP06899 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 MGPP08493 103 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BOP23527 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 SRIP30626 198 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BBP33778 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 CRYBA4P53673 196 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BDP58876 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BCP62807 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 ZNF56Q15929 161 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST2H2BEQ16778 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 COA6Q5JTJ3 125 aaKnown RBP6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.85□□□□□ -1.31
CLN3-261ENST00000637686 NRACQ8N912 160 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BHQ93079 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 PRELID3AQ96N28 172 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BNQ99877 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HIST1H2BMQ99879 126 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 NIT2Q9NQR4 276 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 PRO0255Q9UI72 69 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 HHLA3Q9XRX5 114 aa6.85□□□□□ -1.31
CLN3-261ENST00000637686 A0A096LPF7 62 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 TCAPO15273 167 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 TNFRSF6BO95407 300 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 RHOHQ15669 191 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 C18orf32Q8TCD1 76 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 LINC00588Q9Y4M8 146 aa6.84□□□□□ -1.31
CLN3-261ENST00000637686 IGLV2-18A0A075B6J9 118 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 K7EQD1 137 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 CCL18P55774 89 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 SUMO2P61956 95 aaKnown RBP6.83□□□□□ -1.32
CLN3-261ENST00000637686 KIAA1644Q3SXP7 199 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 PRADC1Q9BSG0 188 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 MAP1LC3AQ9H492 121 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 NXT2Q9NPJ8 142 aaKnown RBP6.83□□□□□ -1.32
CLN3-261ENST00000637686 DNAH6Q9C0G6 4158 aa6.83□□□□□ -1.32
CLN3-261ENST00000637686 IGHV3-73A0A0B4J1V6 119 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 TRAV26-2A0A0B4J265 109 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 TRBV27A0A0K0K1C4 114 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 LINC01546A6NGU7 62 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 M0R2N4 97 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 NPYP01303 97 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 PMCHP20382 165 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 POLR2KP53803 58 aaKnown RBP6.82□□□□□ -1.32
CLN3-261ENST00000637686 ESRGQ1W209 222 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 ST20Q9HBF5 79 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 ICOSQ9Y6W8 199 aa6.82□□□□□ -1.32
CLN3-261ENST00000637686 TRBV7-3A0A075B6L6 115 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 VCYO14598 125 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 NCR2O95944 276 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 LINC00694P0DN24 101 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 ESDP10768 282 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 RPL36AP83881 106 aaKnown RBP6.81□□□□□ -1.32
CLN3-261ENST00000637686 Q6ZSN1 163 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 SH2D6Q7Z4S9 175 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 Q8N8P6 123 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 SLC25A29Q8N8R3 303 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 NEXN-AS1Q8NBZ9 246 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 RPL36ALQ969Q0 106 aaKnown RBP6.81□□□□□ -1.32
CLN3-261ENST00000637686 CHCHD1Q96BP2 118 aaKnown RBP6.81□□□□□ -1.32
CLN3-261ENST00000637686 TMEM70Q9BUB7 260 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 SMIM2Q9BVW6 85 aa6.81□□□□□ -1.32
CLN3-261ENST00000637686 LOC100131303A0A0U1RQF7 123 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 SDHAF1A6NFY7 115 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 SMKR1H3BMG3 65 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 GYPEP15421 78 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 G0S2P27469 103 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 MRPL23Q16540 153 aaKnown RBP6.8□□□□□ -1.32
CLN3-261ENST00000637686 TMEM97Q5BJF2 176 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms