RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HIGD1BQ9P298 99 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 CIDEAO60543 219 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 ATP5LO75964 103 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 PPP1R17O96001 155 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 CRYGDP07320 174 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 TRAV25A0A0B4J276 109 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 NSUN5P1Q3KNT7 163 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 ORMDL2Q53FV1 153 aa11.47□□□□□ -0.57
CLN3-251ENST00000636853 ZNF56Q15929 161 aa11.46□□□□□ -0.57
CLN3-251ENST00000636853 SCGB1A1P11684 91 aa11.46□□□□□ -0.58
CLN3-251ENST00000636853 PROK1P58294 105 aa11.46□□□□□ -0.58
CLN3-251ENST00000636853 ADARB2-AS1A8MUL3 147 aa11.45□□□□□ -0.58
CLN3-251ENST00000636853 SPCS1Q9Y6A9 102 aa11.45□□□□□ -0.58
CLN3-251ENST00000636853 NDUFA7O95182 113 aa11.44□□□□□ -0.58
CLN3-251ENST00000636853 FABP2P12104 132 aa11.44□□□□□ -0.58
CLN3-251ENST00000636853 OTOGQ6ZRI0 2925 aa11.44□□□□□ -0.58
CLN3-251ENST00000636853 TOMM6Q96B49 74 aa11.44□□□□□ -0.58
CLN3-251ENST00000636853 LINC01587Q99440 93 aa11.44□□□□□ -0.58
CLN3-251ENST00000636853 OR11H12B2RN74 326 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.43□□□□□ -0.58
CLN3-251ENST00000636853 K7EMI3 77 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 POLR2KP53803 58 aaKnown RBP11.43□□□□□ -0.58
CLN3-251ENST00000636853 RIPPLY3P57055 190 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 SETXQ7Z333 2677 aaKnown RBP11.43□□□□□ -0.58
CLN3-251ENST00000636853 STHQ8IWL8 128 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 SCGB3A1Q96QR1 104 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 ZMAT4Q9H898 229 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 XCL2Q9UBD3 114 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 M0QY20 66 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 SMIM13P0DJ93 91 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 MORN3Q6PF18 240 aaPredicted RBP11.43□□□□□ -0.58
CLN3-251ENST00000636853 C2orf66Q6UXQ4 117 aa11.43□□□□□ -0.58
CLN3-251ENST00000636853 SDHAF1A6NFY7 115 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 IGKCP01834 107 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 MRPL35Q9NZE8 188 aaKnown RBP11.42□□□□□ -0.58
CLN3-251ENST00000636853 NIPBLQ6KC79 2804 aaeCLIP11.42□□□□□ -0.58
CLN3-251ENST00000636853 IGHV3-73A0A0B4J1V6 119 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 INAFM1C9JVW0 142 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 INSP01308 110 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 KRTAP10-3P60369 221 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 HHLA3Q9XRX5 114 aa11.42□□□□□ -0.58
CLN3-251ENST00000636853 VCYO14598 125 aa11.41□□□□□ -0.58
CLN3-251ENST00000636853 RPL32P62910 135 aaKnown RBP11.41□□□□□ -0.58
CLN3-251ENST00000636853 SAMD5Q5TGI4 173 aa11.41□□□□□ -0.58
CLN3-251ENST00000636853 A0A087WX48 190 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 DPM2O94777 84 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 NMUP48645 174 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 ZNF415Q09FC8 603 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 TRBV6-5A0A0K0K1A5 114 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 ZFP2Q6ZN57 461 aa11.4□□□□□ -0.58
CLN3-251ENST00000636853 TRPT1Q86TN4 253 aaKnown RBP11.4□□□□□ -0.58
CLN3-251ENST00000636853 IGHV3OR16-12A0A075B7B8 117 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 M0R2P5 195 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 PCP2Q8IVA1 136 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 CLUHP3Q96NS8 147 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 KIR2DL4Q99706 377 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 C11orf72Q8NBR9 251 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 TM2D2Q9BX73 214 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 WFDC10AQ9H1F0 79 aa11.39□□□□□ -0.59
CLN3-251ENST00000636853 IGKV2D-26A0A0A0MRZ7 120 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 TRBV27A0A0K0K1C4 114 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 IGLV1-51P01701 117 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 AZU1P20160 251 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 ZC2HC1BQ5TFG8 222 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 GTSCR1Q86UQ5 136 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 NACAE9PAV3 2078 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 RPL39P62891 51 aaKnown RBP11.38□□□□□ -0.59
CLN3-251ENST00000636853 C1orf158Q8N1D5 194 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 NEXN-AS1Q8NBZ9 246 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 BAALCQ8WXS3 180 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 CYSLTR1Q9Y271 337 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 TP53TG1Q9Y2A0 90 aa11.38□□□□□ -0.59
CLN3-251ENST00000636853 P0DMU3 169 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 FAM231AP0DMU4 169 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 FAM231CP0DMU5 169 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 TAL2Q16559 108 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 PHLDA1Q8WV24 401 aaPredicted RBP11.37□□□□□ -0.59
CLN3-251ENST00000636853 LINC00467Q9BRT7 94 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 TRAV12-1A0A0B4J245 112 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 RAB37Q96AX2 223 aa11.37□□□□□ -0.59
CLN3-251ENST00000636853 MRPL16Q9NX20 251 aaKnown RBP11.37□□□□□ -0.59
CLN3-251ENST00000636853 H7C1H1 209 aa11.36□□□□□ -0.59
CLN3-251ENST00000636853 TTTY13Q9BZ97 58 aa11.36□□□□□ -0.59
CLN3-251ENST00000636853 A8MWV9 139 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 F8VRH5 84 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 F8W1H4 67 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 CHAC1Q9BUX1 264 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 JMJD1CQ15652 2540 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 J3QR89 54 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 TSHBP01222 138 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 NDUFA11Q86Y39 141 aa11.35□□□□□ -0.59
CLN3-251ENST00000636853 PRSS29PA6NIE9 313 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 E9PLD3 99 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 PLNP26678 52 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 CFAP126Q5VTH2 177 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 Q6ZSN1 163 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 NAA38Q9BRA0 125 aaKnown RBP11.34□□□□□ -0.59
CLN3-251ENST00000636853 Q9UF83 564 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 IGIPA6NJ69 53 aa11.34□□□□□ -0.59
CLN3-251ENST00000636853 FXYD2P54710 66 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms