RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 C16orf54Q6UWD8 224 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 WISP1O95388 367 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 TIAF1O95411 115 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 SPINT4Q6UDR6 99 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 TMEM254Q8TBM7 123 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 K7ERJ3 54 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 UFSP1Q6NVU6 142 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 TMEM14EPQ6UXP3 125 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-212ENST00000636194 TRBV6-6A0A0A6YYG2 114 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV2-29A2NJV5 120 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-212ENST00000636194 LINC01590Q5TEZ4 76 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 C11orf52Q96A22 123 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 NPBQ8NG41 125 aa4.74□□□□□ -1.65
SCN1A-212ENST00000636194 MDFIQ99750 246 aa4.74□□□□□ -1.65
SCN1A-212ENST00000636194 FASNP49327 2511 aaKnown RBP4.74□□□□□ -1.65
SCN1A-212ENST00000636194 CCDC140Q96MF4 163 aa4.74□□□□□ -1.65
SCN1A-212ENST00000636194 RUSC1-AS1Q66K80 236 aa4.74□□□□□ -1.65
SCN1A-212ENST00000636194 C12orf74Q32Q52 190 aa4.74□□□□□ -1.65
SCN1A-212ENST00000636194 COL11A2P13942 1736 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-212ENST00000636194 SMIM10L1P0DMW3 83 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 SMIM10Q96HG1 83 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-212ENST00000636194 SPRY2O43597 315 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 Q0VFX4 171 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 C10orf55Q5SWW7 151 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 HRCT1Q6UXD1 115 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 ACYP2P14621 99 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 TMEM263Q8WUH6 116 aaKnown RBP4.73□□□□□ -1.65
SCN1A-212ENST00000636194 SHISA4Q96DD7 197 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 C20orf144Q9BQM9 153 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 CR1P17927 2039 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 TRBV7-6A0A0J9YX20 115 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 FAM19A1Q7Z5A9 133 aa4.73□□□□□ -1.65
SCN1A-212ENST00000636194 TIMM17BO60830 172 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 FAM19A3Q7Z5A8 133 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 VOPP1Q96AW1 172 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 KLK12Q9UKR0 248 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 C18orf32Q8TCD1 76 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 LECT2O14960 151 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 NDUFA4L2Q9NRX3 87 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 IGFL4Q6B9Z1 124 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 LINC00322Q6ZN03 302 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-212ENST00000636194 C5orf56Q8N8D9 126 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 PNRC2Q9NPJ4 139 aaKnown RBP4.72□□□□□ -1.65
SCN1A-212ENST00000636194 IGLV3-12A0A075B6K2 115 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 TMEM213A2RRL7 107 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 H3BRN7 92 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 H7C423 109 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 IGLV3-19P01714 112 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 LYPD6BQ8NI32 183 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 WFDC10AQ9H1F0 79 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 DHRS4-AS1Q9P1J3 65 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 PIEZO2Q9H5I5 2752 aa4.72□□□□□ -1.65
SCN1A-212ENST00000636194 UQCRQO14949 82 aa4.71□□□□□ -1.65
SCN1A-212ENST00000636194 OXLD1Q5BKU9 147 aa4.71□□□□□ -1.65
SCN1A-212ENST00000636194 PIN1P1O15428 100 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 ZNF833PQ6ZTB9 187 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 C20orf197Q8N268 126 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 LOXL1Q08397 574 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-212ENST00000636194 ASPHD1Q5U4P2 390 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 Q6ZS49 121 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 IGLC7A0M8Q6 106 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 LINC00643Q86TS7 51 aa4.71□□□□□ -1.66
SCN1A-212ENST00000636194 WDR90Q96KV7 1748 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 CXCL1P09341 107 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 IGLL1P15814 213 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 PIK3CD-AS1Q5SR53 167 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 C4orf3Q8WVX3 66 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 C1QCP02747 245 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 DEFB113Q30KQ7 82 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 PRR31Q5SQ13 230 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 IGKV1-12A0A0C4DH73 117 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 SMIM9A6NGZ8 99 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 CSRP3P50461 194 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 DEFB135Q30KP9 77 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 IGKV1D-8A0A087WSZ0 117 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 K7ENP7 123 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 COL8A2P25067 703 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 C10orf25Q5T742 122 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 APRG1Q8IVJ8 170 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 MAPK1IP1LQ8NDC0 245 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 Q8TCH9 128 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 E7EQL1 145 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 RNF144BQ7Z419 303 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 LINC00337Q8N6G1 96 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 PRO0255Q9UI72 69 aa4.7□□□□□ -1.66
SCN1A-212ENST00000636194 IGKV1-17P01599 117 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 ZFAND3Q9H8U3 227 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 TRAV10A0A0B4J240 114 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 LOXP28300 417 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-212ENST00000636194 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-212ENST00000636194 TRBV27A0A0K0K1C4 114 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 G3V318 75 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 K7EM74 188 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 TRBV10-1A0A0K0K1A3 114 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 TMEM223A0PJW6 202 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 LHFPL1Q86WI0 220 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 IGKV1D-17A0A075B6S4 117 aa4.69□□□□□ -1.66
SCN1A-212ENST00000636194 SPAG11AQ6PDA7 123 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms