RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 TRBV10-1A0A0K0K1A3 114 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 LOC100131303A0A0U1RQF7 123 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 PAX4O43316 350 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 NPYP01303 97 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 SRIP30626 198 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 NEXN-AS1Q8NBZ9 246 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 NIT2Q9NQR4 276 aa14.41□□□□□ -0.1
CLN3-245ENST00000636172 TNFRSF6BO95407 300 aa14.4□□□□□ -0.1
CLN3-245ENST00000636172 OR10J3Q5JRS4 329 aa14.4□□□□□ -0.1
CLN3-245ENST00000636172 PHLDA1Q8WV24 401 aaPredicted RBP14.4□□□□□ -0.1
CLN3-245ENST00000636172 PRADC1Q9BSG0 188 aa14.4□□□□□ -0.1
CLN3-245ENST00000636172 LAMTOR2Q9Y2Q5 125 aa14.38□□□□□ -0.11
CLN3-245ENST00000636172 DNAH7Q8WXX0 4024 aa14.38□□□□□ -0.11
CLN3-245ENST00000636172 TRBV6-5A0A0K0K1A5 114 aa14.37□□□□□ -0.11
CLN3-245ENST00000636172 PPP1R17O96001 155 aa14.37□□□□□ -0.11
CLN3-245ENST00000636172 GYPEP15421 78 aa14.37□□□□□ -0.11
CLN3-245ENST00000636172 GAGE12JA6NER3 117 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 GAGE1Q13065 139 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 GAGE4Q13068 117 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 GAGE5Q13069 117 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 GAGE13Q4V321 117 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 DNAJC30Q96LL9 226 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 TRBV7-3A0A075B6L6 115 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 LINC00694P0DN24 101 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 RPL36AP83881 106 aaKnown RBP14.36□□□□□ -0.11
CLN3-245ENST00000636172 ZNRF2Q8NHG8 242 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 RPL36ALQ969Q0 106 aaKnown RBP14.36□□□□□ -0.11
CLN3-245ENST00000636172 ST20Q9HBF5 79 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 TNFRSF18Q9Y5U5 241 aa14.36□□□□□ -0.11
CLN3-245ENST00000636172 H3BNG1 76 aa14.35□□□□□ -0.11
CLN3-245ENST00000636172 SUMO2P61956 95 aaKnown RBP14.35□□□□□ -0.11
CLN3-245ENST00000636172 C20orf78Q9BR46 151 aa14.35□□□□□ -0.11
CLN3-245ENST00000636172 SDHAF1A6NFY7 115 aa14.33□□□□□ -0.12
CLN3-245ENST00000636172 UBE2D3P61077 147 aa14.33□□□□□ -0.12
CLN3-245ENST00000636172 UBE2D2P62837 147 aa14.33□□□□□ -0.12
CLN3-245ENST00000636172 C18orf32Q8TCD1 76 aa14.33□□□□□ -0.12
CLN3-245ENST00000636172 TMEM70Q9BUB7 260 aa14.33□□□□□ -0.12
CLN3-245ENST00000636172 C1orf196B1AJZ1 125 aa14.32□□□□□ -0.12
CLN3-245ENST00000636172 POLR2KP53803 58 aaKnown RBP14.32□□□□□ -0.12
CLN3-245ENST00000636172 IQCJQ1A5X6 159 aa14.32□□□□□ -0.12
CLN3-245ENST00000636172 MAP1LC3AQ9H492 121 aa14.32□□□□□ -0.12
CLN3-245ENST00000636172 ICOSQ9Y6W8 199 aa14.32□□□□□ -0.12
CLN3-245ENST00000636172 CSMD3Q7Z407 3707 aa14.32□□□□□ -0.12
CLN3-245ENST00000636172 DYNC2H1Q8NCM8 4307 aaKnown RBP14.32□□□□□ -0.12
CLN3-245ENST00000636172 LOC389332A0A1B0GUA5 103 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 PRSS47A8MTI9 375 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BKO60814 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BJP06899 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BOP23527 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BBP33778 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BDP58876 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BCP62807 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST2H2BEQ16778 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.31□□□□□ -0.12
CLN3-245ENST00000636172 NEGR1Q7Z3B1 354 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BHQ93079 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BNQ99877 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 HIST1H2BMQ99879 126 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 SMIM2Q9BVW6 85 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 A0A096LPF7 62 aa14.31□□□□□ -0.12
CLN3-245ENST00000636172 RPL32P62910 135 aaKnown RBP14.31□□□□□ -0.12
CLN3-245ENST00000636172 CEMP1Q6PRD7 247 aaPredicted RBP14.31□□□□□ -0.12
CLN3-245ENST00000636172 IGHV3-38A0A0C4DH36 116 aa14.3□□□□□ -0.12
CLN3-245ENST00000636172 IGLL5B9A064 214 aa14.3□□□□□ -0.12
CLN3-245ENST00000636172 MRPL23Q16540 153 aaKnown RBP14.3□□□□□ -0.12
CLN3-245ENST00000636172 WWC2-AS2Q96NR7 200 aa14.3□□□□□ -0.12
CLN3-245ENST00000636172 IGLV2-18A0A075B6J9 118 aa14.29□□□□□ -0.12
CLN3-245ENST00000636172 TRBV27A0A0K0K1C4 114 aa14.29□□□□□ -0.12
CLN3-245ENST00000636172 NUPR2A6NF83 97 aa14.28□□□□□ -0.12
CLN3-245ENST00000636172 VCYO14598 125 aa14.28□□□□□ -0.12
CLN3-245ENST00000636172 NUDT3O95989 172 aa14.28□□□□□ -0.12
CLN3-245ENST00000636172 IFI27P40305 119 aaPredicted RBP14.28□□□□□ -0.12
CLN3-245ENST00000636172 DAZ4Q86SG3 579 aaKnown RBP14.28□□□□□ -0.12
CLN3-245ENST00000636172 DEFB104AQ8WTQ1 72 aa14.28□□□□□ -0.12
CLN3-245ENST00000636172 DAZ3Q9NR90 486 aaKnown RBP14.28□□□□□ -0.12
CLN3-245ENST00000636172 PMCHP20382 165 aa14.27□□□□□ -0.12
CLN3-245ENST00000636172 Q0VG73 95 aa14.27□□□□□ -0.12
CLN3-245ENST00000636172 Q8N8P6 123 aa14.27□□□□□ -0.12
CLN3-245ENST00000636172 ATP6V0E2Q8NHE4 81 aa14.27□□□□□ -0.12
CLN3-245ENST00000636172 I3L3M4 83 aa14.26□□□□□ -0.13
CLN3-245ENST00000636172 C15orf53Q8NAA6 179 aa14.26□□□□□ -0.13
CLN3-245ENST00000636172 MUC7Q8TAX7 377 aa14.26□□□□□ -0.13
CLN3-245ENST00000636172 NXT2Q9NPJ8 142 aaKnown RBP14.26□□□□□ -0.13
CLN3-245ENST00000636172 RAB5BP61020 215 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 SH2D6Q7Z4S9 175 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 PRSS3P2Q8NHM4 247 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 URB1-AS1Q96HZ7 61 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 TSHBP01222 138 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 ZFAND6Q6FIF0 208 aa14.25□□□□□ -0.13
CLN3-245ENST00000636172 STARD9Q9P2P6 4700 aa14.24□□□□□ -0.13
CLN3-245ENST00000636172 BAGE3Q86Y29 109 aa14.24□□□□□ -0.13
CLN3-245ENST00000636172 KLK5Q9Y337 293 aaPredicted RBP14.24□□□□□ -0.13
CLN3-245ENST00000636172 TCAPO15273 167 aa14.23□□□□□ -0.13
CLN3-245ENST00000636172 COTL1Q14019 142 aa14.23□□□□□ -0.13
CLN3-245ENST00000636172 NIT1Q86X76 327 aa14.23□□□□□ -0.13
CLN3-245ENST00000636172 KIR2DL4Q99706 377 aa14.23□□□□□ -0.13
CLN3-245ENST00000636172 GTSF1LQ9H1H1 148 aa14.23□□□□□ -0.13
CLN3-245ENST00000636172 LINC00310P59036 64 aa14.22□□□□□ -0.13
CLN3-245ENST00000636172 NTM-AS1Q6ZSK4 140 aa14.22□□□□□ -0.13
CLN3-245ENST00000636172 LINC01546A6NGU7 62 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms