RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TRBV7-3A0A075B6L6 115 aa10□□□□□ -0.81
UPF1-211ENST00000600868 LOC100131303A0A0U1RQF7 123 aa10□□□□□ -0.81
UPF1-211ENST00000600868 GAS8-AS1O95177 125 aa10□□□□□ -0.81
UPF1-211ENST00000600868 RPL36AP83881 106 aaKnown RBP10□□□□□ -0.81
UPF1-211ENST00000600868 MRPL23Q16540 153 aaKnown RBP10□□□□□ -0.81
UPF1-211ENST00000600868 ORMDL3Q8N138 153 aa10□□□□□ -0.81
UPF1-211ENST00000600868 RPL36ALQ969Q0 106 aaKnown RBP10□□□□□ -0.81
UPF1-211ENST00000600868 MRPL18Q9H0U6 180 aaKnown RBP10□□□□□ -0.81
UPF1-211ENST00000600868 TRAPPC1Q9Y5R8 145 aa10□□□□□ -0.81
UPF1-211ENST00000600868 ICOSQ9Y6W8 199 aa10□□□□□ -0.81
UPF1-211ENST00000600868 A0A096LPF7 62 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 D6R8Y8 96 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 SMKR1H3BMG3 65 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 NCR2O95944 276 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 LINC00694P0DN24 101 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 RAB5AP20339 215 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 RPS10P46783 165 aaKnown RBP9.99□□□□□ -0.81
UPF1-211ENST00000600868 TCTAP57738 103 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 FABP9Q0Z7S8 132 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 ZFAND6Q6FIF0 208 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 NRACQ8N912 160 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 ZNRF2Q8NHG8 242 aa9.99□□□□□ -0.81
UPF1-211ENST00000600868 RPL39LQ96EH5 51 aaKnown RBP9.99□□□□□ -0.81
UPF1-211ENST00000600868 TRBV6-5A0A0K0K1A5 114 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 GAGE12JA6NER3 117 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 C3orf84H3BNL1 204 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 PHOX2AO14813 284 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 GAGE1Q13065 139 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 GAGE4Q13068 117 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 GAGE5Q13069 117 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 GAGE13Q4V321 117 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 OR10J3Q5JRS4 329 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 SH2D6Q7Z4S9 175 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 LAMTOR2Q9Y2Q5 125 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 TNFRSF18Q9Y5U5 241 aa9.98□□□□□ -0.81
UPF1-211ENST00000600868 NUDT3O95989 172 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 SRIP30626 198 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 UBE2D3P61077 147 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 UBE2D2P62837 147 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 KIAA1644Q3SXP7 199 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 PRELID3AQ96N28 172 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 APLNQ9ULZ1 77 aa9.97□□□□□ -0.81
UPF1-211ENST00000600868 CSMD3Q7Z407 3707 aa9.96□□□□□ -0.81
UPF1-211ENST00000600868 TNFRSF6BO95407 300 aa9.96□□□□□ -0.82
UPF1-211ENST00000600868 NEGR1Q7Z3B1 354 aa9.96□□□□□ -0.82
UPF1-211ENST00000600868 C20orf78Q9BR46 151 aa9.96□□□□□ -0.82
UPF1-211ENST00000600868 ST20Q9HBF5 79 aa9.96□□□□□ -0.82
UPF1-211ENST00000600868 DYNC2H1Q8NCM8 4307 aaKnown RBP9.95□□□□□ -0.82
UPF1-211ENST00000600868 NPYP01303 97 aa9.95□□□□□ -0.82
UPF1-211ENST00000600868 SUMO2P61956 95 aaKnown RBP9.95□□□□□ -0.82
UPF1-211ENST00000600868 CASC10Q5T4H9 136 aa9.95□□□□□ -0.82
UPF1-211ENST00000600868 DAZ4Q86SG3 579 aaKnown RBP9.95□□□□□ -0.82
UPF1-211ENST00000600868 ATP6V0E2Q8NHE4 81 aa9.95□□□□□ -0.82
UPF1-211ENST00000600868 ALKBH7Q9BT30 221 aaPredicted RBP9.95□□□□□ -0.82
UPF1-211ENST00000600868 DAZ3Q9NR90 486 aaKnown RBP9.95□□□□□ -0.82
UPF1-211ENST00000600868 SDHAF1A6NFY7 115 aa9.94□□□□□ -0.82
UPF1-211ENST00000600868 TRGC2P03986 189 aa9.94□□□□□ -0.82
UPF1-211ENST00000600868 POLR2KP53803 58 aaKnown RBP9.94□□□□□ -0.82
UPF1-211ENST00000600868 RPL32P62910 135 aaKnown RBP9.94□□□□□ -0.82
UPF1-211ENST00000600868 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.94□□□□□ -0.82
UPF1-211ENST00000600868 TMEM70Q9BUB7 260 aa9.94□□□□□ -0.82
UPF1-211ENST00000600868 PRSS47A8MTI9 375 aa9.93□□□□□ -0.82
UPF1-211ENST00000600868 TIRAPP58753 221 aa9.93□□□□□ -0.82
UPF1-211ENST00000600868 GTSF1LQ9H1H1 148 aa9.93□□□□□ -0.82
UPF1-211ENST00000600868 TRBV27A0A0K0K1C4 114 aa9.92□□□□□ -0.82
UPF1-211ENST00000600868 VCYO14598 125 aa9.92□□□□□ -0.82
UPF1-211ENST00000600868 MAP1LC3AQ9H492 121 aa9.92□□□□□ -0.82
UPF1-211ENST00000600868 IGHV3-38A0A0C4DH36 116 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 I3L3M4 83 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 ESRGQ1W209 222 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 TMEM97Q5BJF2 176 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 LYPD5Q6UWN5 251 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 SMIM2Q9BVW6 85 aa9.91□□□□□ -0.82
UPF1-211ENST00000600868 PMCHP20382 165 aa9.9□□□□□ -0.82
UPF1-211ENST00000600868 IGLV2-18A0A075B6J9 118 aa9.89□□□□□ -0.83
UPF1-211ENST00000600868 LOC389332A0A1B0GUA5 103 aa9.89□□□□□ -0.83
UPF1-211ENST00000600868 CCL18P55774 89 aa9.89□□□□□ -0.83
UPF1-211ENST00000600868 COTL1Q14019 142 aa9.89□□□□□ -0.83
UPF1-211ENST00000600868 TENM2Q9NT68 2774 aa9.89□□□□□ -0.83
UPF1-211ENST00000600868 TRBV6-8A0A0A6YYG3 113 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 TCAPO15273 167 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 LELP1Q5T871 98 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 NTM-AS1Q6ZSK4 140 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 Q8N8P6 123 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 C18orf32Q8TCD1 76 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 KIR2DL4Q99706 377 aa9.88□□□□□ -0.83
UPF1-211ENST00000600868 NXT2Q9NPJ8 142 aaKnown RBP9.88□□□□□ -0.83
UPF1-211ENST00000600868 TSHBP01222 138 aa9.87□□□□□ -0.83
UPF1-211ENST00000600868 IFI27P40305 119 aaPredicted RBP9.87□□□□□ -0.83
UPF1-211ENST00000600868 MRPS16Q9Y3D3 137 aaKnown RBP9.87□□□□□ -0.83
UPF1-211ENST00000600868 LINC00588Q9Y4M8 146 aa9.87□□□□□ -0.83
UPF1-211ENST00000600868 K7EMI3 77 aa9.86□□□□□ -0.83
UPF1-211ENST00000600868 IQCJQ1A5X6 159 aa9.86□□□□□ -0.83
UPF1-211ENST00000600868 PRSS3P2Q8NHM4 247 aa9.86□□□□□ -0.83
UPF1-211ENST00000600868 TRBV25-1A0A075B6N4 114 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 IGHV1-24A0A0C4DH33 117 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 LINC01546A6NGU7 62 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 FCER1GP30273 86 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 Q0VG73 95 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 DEFB104AQ8WTQ1 72 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms