RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PIFOQ8TCI5 191 aa11.49□□□□□ -0.57
UPF1-204ENST00000596842 PKD1L2Q7Z442 2459 aa11.49□□□□□ -0.57
UPF1-204ENST00000596842 TRBV7-3A0A075B6L6 115 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 IGHV1-69DA0A0B4J2H0 117 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 SDHAF1A6NFY7 115 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 IGHV1-69P01742 117 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 C10orf99Q6UWK7 81 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 FAM110AQ9BQ89 295 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 CCDC168Q8NDH2 2452 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 LRRK2Q5S007 2527 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 FAM223BA6NKX1 122 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 FAM223AQ8IWN6 122 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 LINC01546A6NGU7 62 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 ITLN2Q8WWU7 325 aaPredicted RBP11.48□□□□□ -0.57
UPF1-204ENST00000596842 MRPL53Q96EL3 112 aaKnown RBP11.48□□□□□ -0.57
UPF1-204ENST00000596842 U3KQE9 123 aa11.48□□□□□ -0.57
UPF1-204ENST00000596842 PMVKQ15126 192 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 SUMO4Q6EEV6 95 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 MAPK1IP1LQ8NDC0 245 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 NDUFA4O00483 81 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 GNLYP22749 145 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 SPINK13Q1W4C9 94 aa11.47□□□□□ -0.57
UPF1-204ENST00000596842 CRLF1O75462 422 aa11.46□□□□□ -0.57
UPF1-204ENST00000596842 VCX2Q9H322 139 aa11.46□□□□□ -0.57
UPF1-204ENST00000596842 MDFICQ9P1T7 246 aa11.46□□□□□ -0.57
UPF1-204ENST00000596842 TRAV12-1A0A0B4J245 112 aa11.46□□□□□ -0.58
UPF1-204ENST00000596842 ADARB2-AS1A8MUL3 147 aa11.46□□□□□ -0.58
UPF1-204ENST00000596842 ITPR1Q14643 2758 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 RNASE13Q5GAN3 156 aaKnown RBP11.45□□□□□ -0.58
UPF1-204ENST00000596842 MORN3Q6PF18 240 aaPredicted RBP11.45□□□□□ -0.58
UPF1-204ENST00000596842 DAZ1Q9NQZ3 744 aaKnown RBP11.45□□□□□ -0.58
UPF1-204ENST00000596842 IGHV4-4A0A075B6R2 117 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 TAL2Q16559 108 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 C2orf82Q6UX34 121 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 TCL1BO95988 128 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 NRGNQ92686 78 aa11.45□□□□□ -0.58
UPF1-204ENST00000596842 LGALS3P17931 250 aaKnown RBP11.44□□□□□ -0.58
UPF1-204ENST00000596842 DUX3Q96PT4 197 aa11.44□□□□□ -0.58
UPF1-204ENST00000596842 KLK5Q9Y337 293 aaPredicted RBP11.44□□□□□ -0.58
UPF1-204ENST00000596842 FAM236AA0A1B0GUQ0 79 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 FAM236BA0A1B0GV22 79 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 PRM2P04554 102 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 LINC00694P0DN24 101 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 A0A0U1RRA0 63 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 TEX49A0A1B0GTD5 131 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 KNCNA6PVL3 124 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 CRYGDP07320 174 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 PIMREGQ9BSJ6 248 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 VPREB3Q9UKI3 123 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 LENEPQ9Y5L5 61 aa11.43□□□□□ -0.58
UPF1-204ENST00000596842 JMJD1CQ15652 2540 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 HIST2H2BDQ6DRA6 164 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 TSHBP01222 138 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 TSPEAR-AS2P59090 65 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 NAV2Q8IVL1 2488 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 PIEZO1Q92508 2521 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 VCYO14598 125 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 CCL19Q99731 98 aa11.42□□□□□ -0.58
UPF1-204ENST00000596842 UCNP55089 124 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 TRAV8-3A0A0A6YYJ7 113 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 RNF223E7ERA6 249 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 ANKRD17O75179 2603 aaKnown RBP11.41□□□□□ -0.58
UPF1-204ENST00000596842 CFAP46Q8IYW2 2715 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 IGHV4-30-2A0A087WSY4 118 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 SOCS3O14543 225 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 SYNJ2BPP57105 145 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 CFAP126Q5VTH2 177 aa11.41□□□□□ -0.58
UPF1-204ENST00000596842 FHL3Q13643 280 aa11.4□□□□□ -0.58
UPF1-204ENST00000596842 ZNF876PQ49A33 203 aa11.4□□□□□ -0.58
UPF1-204ENST00000596842 ZNRF2Q8NHG8 242 aa11.4□□□□□ -0.58
UPF1-204ENST00000596842 C1orf43Q9BWL3 253 aa11.4□□□□□ -0.58
UPF1-204ENST00000596842 Q8N1Y9 231 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 OR13C6PQ8NH95 151 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 USMG5Q96IX5 58 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 SPXQ9BT56 116 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 ZNF580Q9UK33 172 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 EPG5Q9HCE0 2579 aa11.4□□□□□ -0.59
UPF1-204ENST00000596842 BRI3O95415 125 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 PPP1R17O96001 155 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 P0DMU3 169 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 FAM231AP0DMU4 169 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 FAM231CP0DMU5 169 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 KHDC1LQ5JSQ8 128 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 CARD19Q96LW7 228 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 CEMP1Q6PRD7 247 aaPredicted RBP11.39□□□□□ -0.59
UPF1-204ENST00000596842 IGLV4-69A0A075B6H9 119 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 J3QQQ9 107 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 GAGE2AQ6NT46 116 aa11.39□□□□□ -0.59
UPF1-204ENST00000596842 A0A0J9YY99 117 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 COX6CP09669 75 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 TNFRSF18Q9Y5U5 241 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 C5orf47Q569G3 176 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 A0A0J9YXV3 536 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 IGHV4-59P01825 116 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 IGHG2P01859 326 aa11.38□□□□□ -0.59
UPF1-204ENST00000596842 TRGV11A0A075B6L2 103 aa11.37□□□□□ -0.59
UPF1-204ENST00000596842 AVPP01185 164 aa11.37□□□□□ -0.59
UPF1-204ENST00000596842 NDUFA11Q86Y39 141 aa11.37□□□□□ -0.59
UPF1-204ENST00000596842 RHODO00212 210 aa11.37□□□□□ -0.59
UPF1-204ENST00000596842 SNRPD3P62318 126 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms