RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 IGHV1-69P01742 117 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 IGHV1-46P01743 117 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 RBP4P02753 201 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 PRSS1P07477 247 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 RPL7P18124 248 aaKnown RBP3.13□□□□□ -1.91
LIG3-211ENST00000588713 ASIPP42127 132 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 LAGE3Q14657 143 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 MORN3Q6PF18 240 aaPredicted RBP3.13□□□□□ -1.91
LIG3-211ENST00000588713 Q6Q795 121 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 LINC00336Q6ZUF6 198 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 SH2D6Q7Z4S9 175 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 GTSCR1Q86UQ5 136 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 C8orf49Q96NF6 230 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 CCL13Q99616 98 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 RNF5Q99942 180 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 C20orf78Q9BR46 151 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 MRPL35Q9NZE8 188 aaKnown RBP3.13□□□□□ -1.91
LIG3-211ENST00000588713 ZNRD1Q9P1U0 126 aa3.13□□□□□ -1.91
LIG3-211ENST00000588713 A8MWV9 139 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 SMKR1H3BMG3 65 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 H7C1H1 209 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 K7EIM0 57 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 CDK2AP2O75956 126 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 IGHV3-48P01763 117 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 MT-ATP8P03928 68 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ZNF688P0C7X2 276 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 CCL3L1P16619 93 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 XGP55808 180 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 DLX6P56179 175 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ATP5G2Q06055 141 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 FHL3Q13643 280 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 TMEM95Q3KNT9 176 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 TMEM155Q4W5P6 130 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ORMDL2Q53FV1 153 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 SPRNQ5BIV9 151 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 HCP5Q6MZN7 132 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 PPP1R27Q86WC6 154 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ZNF491Q8N8L2 437 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 NRACQ8N912 160 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 MYOZ3Q8TDC0 251 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 MRPL53Q96EL3 112 aaKnown RBP3.12□□□□□ -1.91
LIG3-211ENST00000588713 LINC01600Q96MT4 127 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 FAM110AQ9BQ89 295 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 SLC50A1Q9BRV3 221 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ANAPC13Q9BS18 74 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 SMIM2Q9BVW6 85 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 TTTY13Q9BZ97 58 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 PLA2G2DQ9UNK4 145 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 ZNF256Q9Y2P7 627 aaPredicted RBP3.12□□□□□ -1.91
LIG3-211ENST00000588713 SELENOKQ9Y6D0 94 aa3.12□□□□□ -1.91
LIG3-211ENST00000588713 IGHV4-4A0A075B6R2 117 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 IGKV2-40A0A087WW87 121 aaPredicted RBP3.11□□□□□ -1.91
LIG3-211ENST00000588713 TMSB15BA0A087X1C1 80 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 H3BUX3 64 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 M0R381 172 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 M0R3E3 92 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 NDUFB3O43676 98 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 FCN3O75636 299 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 IGKV2D-40P01614 121 aaPredicted RBP3.11□□□□□ -1.91
LIG3-211ENST00000588713 LGALS1P09382 135 aaKnown RBP3.11□□□□□ -1.91
LIG3-211ENST00000588713 IGHV1-8P0DP01 117 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 EGR2P11161 476 aaPredicted RBP3.11□□□□□ -1.91
LIG3-211ENST00000588713 INSL3P51460 131 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 FXYD7P58549 80 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 HERVK_113P61574 105 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 GAGE5Q13069 117 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 GAGE6Q13070 117 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 MRPL23Q16540 153 aaKnown RBP3.11□□□□□ -1.91
LIG3-211ENST00000588713 PAPPA-AS1Q5QFB9 102 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 FAM201AQ5SY85 155 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 TMEM78Q5T7P6 136 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 TMEM200BQ69YZ2 307 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 AMTNQ6UX39 209 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 ANKRD29Q8N6D5 301 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 TOMM6Q96B49 74 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 RNF183Q96D59 192 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 ZNF702PQ9H963 129 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 KAAG1Q9UBP8 84 aa3.11□□□□□ -1.91
LIG3-211ENST00000588713 IGLV11-55A0A075B6I3 123 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 IGHV1-3A0A0C4DH29 117 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 ZNF815PA8K554 130 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 FABP5P3A8MUU1 101 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 EPM2AB3EWF7 344 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 TMEM178BH3BS89 294 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 RHODO00212 210 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 NDUFA3O95167 84 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 IGLV1-47P01700 117 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 CD7P09564 240 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 P0DMU3 169 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 FAM231AP0DMU4 169 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 FAM231CP0DMU5 169 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 CNTFRP26992 372 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 ZNF80P51504 273 aaPredicted RBP3.1□□□□□ -1.91
LIG3-211ENST00000588713 MFAP4P55083 255 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 RPL32P62910 135 aaKnown RBP3.1□□□□□ -1.91
LIG3-211ENST00000588713 PRB3Q04118 309 aaPredicted RBP3.1□□□□□ -1.91
LIG3-211ENST00000588713 ERCC8Q13216 396 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 DIAPH2-AS1Q14236 149 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 NFE4Q86UQ8 179 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 C10orf126Q8N4M7 172 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms