RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 SUMO4Q6EEV6 95 aa17.04■□□□□ 0.32
ATPAF1-213ENST00000574428 RNASEKQ6P5S7 137 aaKnown RBP17.04■□□□□ 0.32
ATPAF1-213ENST00000574428 ZFP2Q6ZN57 461 aa17.04■□□□□ 0.32
ATPAF1-213ENST00000574428 C18orf15Q96N68 181 aa17.04■□□□□ 0.32
ATPAF1-213ENST00000574428 DNAH9Q9NYC9 4486 aa17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 GATA1P15976 413 aaPredicted RBP17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 AMTP48728 403 aa17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 Q6ZSN1 163 aa17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 U3KQK5 164 aa17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 PRKDCP78527 4128 aaKnown RBP17.03■□□□□ 0.32
ATPAF1-213ENST00000574428 TEX48A0A1B0GUV7 120 aa17.02■□□□□ 0.32
ATPAF1-213ENST00000574428 NIT1Q86X76 327 aa17.02■□□□□ 0.32
ATPAF1-213ENST00000574428 ORMDL3Q8N138 153 aa17.02■□□□□ 0.31
ATPAF1-213ENST00000574428 MRAP2Q96G30 205 aa17.02■□□□□ 0.31
ATPAF1-213ENST00000574428 C12orf74Q32Q52 190 aa17.01■□□□□ 0.31
ATPAF1-213ENST00000574428 FAM19A2Q8N3H0 131 aa17.01■□□□□ 0.31
ATPAF1-213ENST00000574428 NHLRC4P0CG21 123 aaPredicted RBP17■□□□□ 0.31
ATPAF1-213ENST00000574428 HSBP1O75506 76 aa17■□□□□ 0.31
ATPAF1-213ENST00000574428 PRELID3AQ96N28 172 aa17■□□□□ 0.31
ATPAF1-213ENST00000574428 TRGV4A0A0C4DH28 118 aa16.99■□□□□ 0.31
ATPAF1-213ENST00000574428 PPBPP02775 128 aa16.99■□□□□ 0.31
ATPAF1-213ENST00000574428 M0QY20 66 aa16.98■□□□□ 0.31
ATPAF1-213ENST00000574428 FHL2Q14192 279 aa16.98■□□□□ 0.31
ATPAF1-213ENST00000574428 CHCHD1Q96BP2 118 aaKnown RBP16.98■□□□□ 0.31
ATPAF1-213ENST00000574428 RPL39LQ96EH5 51 aaKnown RBP16.98■□□□□ 0.31
ATPAF1-213ENST00000574428 NPYP01303 97 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 P0DMU3 169 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 FAM231AP0DMU4 169 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 FAM231CP0DMU5 169 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 NRACQ8N912 160 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 C11orf45Q8TAV5 145 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 PCP4L1A6NKN8 68 aa16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 NANOS2P60321 138 aaKnown RBP16.97■□□□□ 0.31
ATPAF1-213ENST00000574428 CIDEAO60543 219 aa16.96■□□□□ 0.31
ATPAF1-213ENST00000574428 ATP5G1P05496 136 aa16.96■□□□□ 0.31
ATPAF1-213ENST00000574428 LINC00614P0C842 121 aa16.96■□□□□ 0.31
ATPAF1-213ENST00000574428 HTN3P15516 51 aa16.96■□□□□ 0.31
ATPAF1-213ENST00000574428 Q6ZTC4 211 aa16.95■□□□□ 0.3
ATPAF1-213ENST00000574428 SLC25A29Q8N8R3 303 aa16.95■□□□□ 0.3
ATPAF1-213ENST00000574428 Q9UF83 564 aa16.95■□□□□ 0.3
ATPAF1-213ENST00000574428 TNFRSF6BO95407 300 aa16.94■□□□□ 0.3
ATPAF1-213ENST00000574428 FBN3Q75N90 2809 aa16.94■□□□□ 0.3
ATPAF1-213ENST00000574428 H7C1H1 209 aa16.93■□□□□ 0.3
ATPAF1-213ENST00000574428 K7EQD1 137 aa16.93■□□□□ 0.3
ATPAF1-213ENST00000574428 EDA2RQ9HAV5 297 aa16.93■□□□□ 0.3
ATPAF1-213ENST00000574428 F5H768 121 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 PMCHL1Q16048 86 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 HHLA3Q9XRX5 114 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 IGHV1-24A0A0C4DH33 117 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 SCGB1D1O95968 90 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 LAMTOR2Q9Y2Q5 125 aa16.92■□□□□ 0.3
ATPAF1-213ENST00000574428 PRSS3P2Q8NHM4 247 aa16.91■□□□□ 0.3
ATPAF1-213ENST00000574428 LOC389332A0A1B0GUA5 103 aa16.9■□□□□ 0.3
ATPAF1-213ENST00000574428 TRBV6-4A0A1B0GX49 114 aa16.9■□□□□ 0.3
ATPAF1-213ENST00000574428 IFI27P40305 119 aaPredicted RBP16.9■□□□□ 0.3
ATPAF1-213ENST00000574428 KRTDAPP60985 99 aa16.9■□□□□ 0.3
ATPAF1-213ENST00000574428 STAB2Q8WWQ8 2551 aa16.9■□□□□ 0.3
ATPAF1-213ENST00000574428 FA2HQ7L5A8 372 aa16.89■□□□□ 0.3
ATPAF1-213ENST00000574428 NEXN-AS1Q8NBZ9 246 aa16.89■□□□□ 0.3
ATPAF1-213ENST00000574428 LOC100131303A0A0U1RQF7 123 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 PPP1R17O96001 155 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 CRYBA4P53673 196 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 MAP1LC3AQ9H492 121 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 AP5S1Q9NUS5 200 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 PRO0255Q9UI72 69 aa16.89■□□□□ 0.29
ATPAF1-213ENST00000574428 SUMO2P61956 95 aaKnown RBP16.88■□□□□ 0.29
ATPAF1-213ENST00000574428 RHOHQ15669 191 aa16.88■□□□□ 0.29
ATPAF1-213ENST00000574428 C3orf79P0CE67 100 aa16.87■□□□□ 0.29
ATPAF1-213ENST00000574428 ST20Q9HBF5 79 aa16.87■□□□□ 0.29
ATPAF1-213ENST00000574428 A0A0J9YY99 117 aa16.87■□□□□ 0.29
ATPAF1-213ENST00000574428 TRBV6-5A0A0K0K1A5 114 aa16.87■□□□□ 0.29
ATPAF1-213ENST00000574428 TNFRSF18Q9Y5U5 241 aa16.87■□□□□ 0.29
ATPAF1-213ENST00000574428 TRBV10-1A0A0K0K1A3 114 aa16.86■□□□□ 0.29
ATPAF1-213ENST00000574428 Q8N976 141 aa16.86■□□□□ 0.29
ATPAF1-213ENST00000574428 C20orf78Q9BR46 151 aa16.86■□□□□ 0.29
ATPAF1-213ENST00000574428 PRADC1Q9BSG0 188 aa16.86■□□□□ 0.29
ATPAF1-213ENST00000574428 TRAV26-1A0A087WT03 109 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 GAGE12JA6NER3 117 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 PAX4O43316 350 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 GAGE1Q13065 139 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 GAGE4Q13068 117 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 GAGE5Q13069 117 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 GAGE13Q4V321 117 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 NEGR1Q7Z3B1 354 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 ZNRF2Q8NHG8 242 aa16.85■□□□□ 0.29
ATPAF1-213ENST00000574428 SDHAF1A6NFY7 115 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 VSIG2Q96IQ7 327 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 TMEM70Q9BUB7 260 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 DEFB131BA0A096LNP1 70 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 S100A12P80511 92 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 DNAJC30Q96LL9 226 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 SMIM2Q9BVW6 85 aa16.84■□□□□ 0.29
ATPAF1-213ENST00000574428 GYPEP15421 78 aa16.83■□□□□ 0.28
ATPAF1-213ENST00000574428 RPL36AP83881 106 aaKnown RBP16.83■□□□□ 0.28
ATPAF1-213ENST00000574428 DEFB104AQ8WTQ1 72 aa16.83■□□□□ 0.28
ATPAF1-213ENST00000574428 RPL36ALQ969Q0 106 aaKnown RBP16.83■□□□□ 0.28
ATPAF1-213ENST00000574428 TRBV7-3A0A075B6L6 115 aa16.82■□□□□ 0.28
ATPAF1-213ENST00000574428 LEPROTL1O95214 131 aa16.82■□□□□ 0.28
ATPAF1-213ENST00000574428 LINC00173Q6ZV60 143 aa16.82■□□□□ 0.28
ATPAF1-213ENST00000574428 PRSS47A8MTI9 375 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms