RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PRSS3P2Q8NHM4 247 aa21.66■■□□□ 1.06
CTCF-203ENST00000566078 URB1-AS1Q96HZ7 61 aa21.66■■□□□ 1.06
CTCF-203ENST00000566078 ZMAT4Q9H898 229 aa21.66■■□□□ 1.06
CTCF-203ENST00000566078 TRGV4A0A0C4DH28 118 aa21.66■■□□□ 1.06
CTCF-203ENST00000566078 SUMO2P61956 95 aaKnown RBP21.66■■□□□ 1.06
CTCF-203ENST00000566078 C20orf78Q9BR46 151 aa21.66■■□□□ 1.06
CTCF-203ENST00000566078 HUWE1Q7Z6Z7 4374 aaKnown RBP21.65■■□□□ 1.06
CTCF-203ENST00000566078 A0A0J9YWU9 116 aa21.65■■□□□ 1.06
CTCF-203ENST00000566078 NUPR1O60356 82 aa21.65■■□□□ 1.06
CTCF-203ENST00000566078 B9D2Q9BPU9 175 aa21.65■■□□□ 1.06
CTCF-203ENST00000566078 ST20Q9HBF5 79 aa21.65■■□□□ 1.06
CTCF-203ENST00000566078 NIT2Q9NQR4 276 aa21.65■■□□□ 1.06
CTCF-203ENST00000566078 HOXA5P20719 270 aa21.64■■□□□ 1.05
CTCF-203ENST00000566078 PDZD11Q5EBL8 140 aa21.64■■□□□ 1.05
CTCF-203ENST00000566078 K7EQD1 137 aa21.63■■□□□ 1.05
CTCF-203ENST00000566078 FHL2Q14192 279 aa21.63■■□□□ 1.05
CTCF-203ENST00000566078 FA2HQ7L5A8 372 aa21.63■■□□□ 1.05
CTCF-203ENST00000566078 TRBV6-5A0A0K0K1A5 114 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 PRSS47A8MTI9 375 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 SMIM2Q9BVW6 85 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 LINC00614P0C842 121 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 PMCHP20382 165 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 SLC25A29Q8N8R3 303 aa21.62■■□□□ 1.05
CTCF-203ENST00000566078 DEFA6Q01524 100 aa21.61■■□□□ 1.05
CTCF-203ENST00000566078 HIST3H2BBQ8N257 126 aa21.61■■□□□ 1.05
CTCF-203ENST00000566078 Q8N8P6 123 aa21.61■■□□□ 1.05
CTCF-203ENST00000566078 CHCHD1Q96BP2 118 aaKnown RBP21.61■■□□□ 1.05
CTCF-203ENST00000566078 NXT2Q9NPJ8 142 aaKnown RBP21.61■■□□□ 1.05
CTCF-203ENST00000566078 NEXN-AS1Q8NBZ9 246 aa21.6■■□□□ 1.05
CTCF-203ENST00000566078 Q9UF83 564 aa21.6■■□□□ 1.05
CTCF-203ENST00000566078 DNAH9Q9NYC9 4486 aa21.6■■□□□ 1.05
CTCF-203ENST00000566078 IGLV2-18A0A075B6J9 118 aa21.59■■□□□ 1.05
CTCF-203ENST00000566078 ESDP10768 282 aa21.59■■□□□ 1.05
CTCF-203ENST00000566078 TMEM70Q9BUB7 260 aa21.59■■□□□ 1.05
CTCF-203ENST00000566078 SDHAF1A6NFY7 115 aa21.58■■□□□ 1.05
CTCF-203ENST00000566078 TNFRSF18Q9Y5U5 241 aa21.58■■□□□ 1.05
CTCF-203ENST00000566078 MEGF8Q7Z7M0 2845 aa21.58■■□□□ 1.05
CTCF-203ENST00000566078 HSBP1O75506 76 aa21.58■■□□□ 1.04
CTCF-203ENST00000566078 ATP5G1P05496 136 aa21.58■■□□□ 1.04
CTCF-203ENST00000566078 AP5S1Q9NUS5 200 aa21.58■■□□□ 1.04
CTCF-203ENST00000566078 TRBV6-4A0A1B0GX49 114 aa21.57■■□□□ 1.04
CTCF-203ENST00000566078 C12orf74Q32Q52 190 aa21.57■■□□□ 1.04
CTCF-203ENST00000566078 NEGR1Q7Z3B1 354 aa21.57■■□□□ 1.04
CTCF-203ENST00000566078 DNAJC30Q96LL9 226 aa21.57■■□□□ 1.04
CTCF-203ENST00000566078 POLR2KP53803 58 aaKnown RBP21.56■■□□□ 1.04
CTCF-203ENST00000566078 RPL32P62910 135 aaKnown RBP21.56■■□□□ 1.04
CTCF-203ENST00000566078 COL7A1Q02388 2944 aa21.55■■□□□ 1.04
CTCF-203ENST00000566078 TRBV10-1A0A0K0K1A3 114 aa21.55■■□□□ 1.04
CTCF-203ENST00000566078 S100A2P29034 98 aa21.55■■□□□ 1.04
CTCF-203ENST00000566078 RHOHQ15669 191 aa21.55■■□□□ 1.04
CTCF-203ENST00000566078 HHLA3Q9XRX5 114 aa21.55■■□□□ 1.04
CTCF-203ENST00000566078 TCAPO15273 167 aa21.53■■□□□ 1.04
CTCF-203ENST00000566078 PMCHL1Q16048 86 aa21.53■■□□□ 1.04
CTCF-203ENST00000566078 FAM19A2Q8N3H0 131 aa21.53■■□□□ 1.04
CTCF-203ENST00000566078 LINC01546A6NGU7 62 aa21.52■■□□□ 1.04
CTCF-203ENST00000566078 VCYO14598 125 aa21.52■■□□□ 1.04
CTCF-203ENST00000566078 HTN3P15516 51 aa21.52■■□□□ 1.04
CTCF-203ENST00000566078 ZNRF2Q8NHG8 242 aa21.52■■□□□ 1.04
CTCF-203ENST00000566078 PRADC1Q9BSG0 188 aa21.52■■□□□ 1.04
CTCF-203ENST00000566078 TRBV27A0A0K0K1C4 114 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 IFITM10A6NMD0 228 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 AMTP48728 403 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 RPL36AP83881 106 aaKnown RBP21.51■■□□□ 1.03
CTCF-203ENST00000566078 C11orf45Q8TAV5 145 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 RPL36ALQ969Q0 106 aaKnown RBP21.51■■□□□ 1.03
CTCF-203ENST00000566078 PRO0255Q9UI72 69 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 IGHV1-24A0A0C4DH33 117 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 LOC100131303A0A0U1RQF7 123 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 CRYBA4P53673 196 aa21.51■■□□□ 1.03
CTCF-203ENST00000566078 TRBV7-3A0A075B6L6 115 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 GAGE12JA6NER3 117 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 F5H768 121 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 GAGE1Q13065 139 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 GAGE4Q13068 117 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 GAGE5Q13069 117 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 GAGE13Q4V321 117 aa21.5■■□□□ 1.03
CTCF-203ENST00000566078 PRKDCP78527 4128 aaKnown RBP21.49■■□□□ 1.03
CTCF-203ENST00000566078 DEFB104AQ8WTQ1 72 aa21.49■■□□□ 1.03
CTCF-203ENST00000566078 HIST1H2BLQ99880 126 aa21.49■■□□□ 1.03
CTCF-203ENST00000566078 LOC105371267A0A1B0GV96 52 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 I3L3M4 83 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 FABP4P15090 132 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 NANOS2P60321 138 aaKnown RBP21.48■■□□□ 1.03
CTCF-203ENST00000566078 LAGE3Q14657 143 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 Q6ZTC4 211 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 TMEM18Q96B42 140 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 KIR2DL4Q99706 377 aa21.48■■□□□ 1.03
CTCF-203ENST00000566078 PHLDA1Q8WV24 401 aaPredicted RBP21.47■■□□□ 1.03
CTCF-203ENST00000566078 IGHV3-38A0A0C4DH36 116 aa21.45■■□□□ 1.02
CTCF-203ENST00000566078 K7EMI3 77 aa21.45■■□□□ 1.02
CTCF-203ENST00000566078 PAX4O43316 350 aa21.45■■□□□ 1.02
CTCF-203ENST00000566078 UBE2D3P61077 147 aa21.45■■□□□ 1.02
CTCF-203ENST00000566078 UBE2D2P62837 147 aa21.45■■□□□ 1.02
CTCF-203ENST00000566078 NHLRC4P0CG21 123 aaPredicted RBP21.44■■□□□ 1.02
CTCF-203ENST00000566078 GYPEP15421 78 aa21.44■■□□□ 1.02
CTCF-203ENST00000566078 FCER1GP30273 86 aa21.44■■□□□ 1.02
CTCF-203ENST00000566078 ORMDL2Q53FV1 153 aa21.44■■□□□ 1.02
CTCF-203ENST00000566078 A0A0J9YY99 117 aa21.44■■□□□ 1.02
CTCF-203ENST00000566078 TSHBP01222 138 aa21.44■■□□□ 1.02
CTCF-203ENST00000566078 A0A096LNJ9 63 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms