RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 IDO1P14902 403 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 COPZ1P61923 177 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 ZNF345Q14585 488 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 DPPA3Q6W0C5 159 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 Q6ZQT0 140 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 DCANP1Q8TF63 244 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 C1orf54Q8WWF1 131 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 SDF2Q99470 211 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 PBOV1Q9GZY1 135 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 TAS2R7Q9NYW3 318 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 NOP16Q9Y3C1 178 aaKnown RBP2.2□□□□□ -2.06
VPS13C-210ENST00000561258 H0YJX3 145 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 OR2T1O43869 369 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 ZNF737O75373 536 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 RNASE4P34096 147 aaKnown RBP2.19□□□□□ -2.06
VPS13C-210ENST00000561258 GUCA1AP43080 201 aaPredicted RBP2.19□□□□□ -2.06
VPS13C-210ENST00000561258 CAV3P56539 151 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 PCBD1P61457 104 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 MYL5Q02045 173 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 DEFB135Q30KP9 77 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 SCGB2B2Q4G0G5 96 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 KHDC3LQ587J8 217 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 MINOS1Q5TGZ0 78 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 C15orf53Q8NAA6 179 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 PBDC1Q9BVG4 233 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 DPY30Q9C005 99 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 MIXL1Q9H2W2 232 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 EPDR1Q9UM22 224 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 LHFPL6Q9Y693 200 aa2.19□□□□□ -2.06
VPS13C-210ENST00000561258 TMEM212A6NML5 194 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 IQCF6A8MYZ5 107 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 TAX1BP3O14907 124 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 ORC5O43913 435 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 PMP2P02689 132 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 CTSDP07339 412 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-210ENST00000561258 EIF5AP63241 154 aaKnown RBP2.18□□□□□ -2.06
VPS13C-210ENST00000561258 SNCBQ16143 134 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 ZNF826PQ6ZT77 177 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 C10orf126Q8N4M7 172 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 OR5D16Q8NGK9 328 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 RNASE11Q8TAA1 199 aaKnown RBP2.18□□□□□ -2.06
VPS13C-210ENST00000561258 HIST1H2BLQ99880 126 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 ADAT1Q9BUB4 502 aaKnown RBP2.18□□□□□ -2.06
VPS13C-210ENST00000561258 OR2H1Q9GZK4 316 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 WFDC10AQ9H1F0 79 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 C8orf4Q9NR00 106 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 NDUFAF1Q9Y375 327 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 PKHD1L1Q86WI1 4243 aa2.18□□□□□ -2.06
VPS13C-210ENST00000561258 LRP1Q07954 4544 aaKnown RBP2.18□□□□□ -2.06
VPS13C-210ENST00000561258 TRAV36DV7A0A075B6V5 113 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 TRAV10A0A0B4J240 114 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 A0A1B0GV72 72 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 DUXBA0A1W2PPF3 345 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 RIIAD1A6NNX1 92 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 M0R378 163 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 GPR31O00270 319 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 SDCBPO00560 298 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-210ENST00000561258 BANF1O75531 89 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 CCL3L1P16619 93 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 SMIM15Q7Z3B0 74 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 C5orf56Q8N8D9 126 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-210ENST00000561258 GPER1Q99527 375 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 TMEM70Q9BUB7 260 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 C19orf12Q9NSK7 152 aa2.17□□□□□ -2.06
VPS13C-210ENST00000561258 CSN2P05814 226 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 HAMPP81172 84 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 C7orf65Q6ZTY9 151 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 AQP3Q92482 292 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 GAFA1Q96PS6 74 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 WFDC6Q9BQY6 131 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 PCTPQ9UKL6 214 aa2.16□□□□□ -2.06
VPS13C-210ENST00000561258 FAT3Q8TDW7 4589 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 IGKV1D-42A0A075B6H8 117 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 MIF4GDA9UHW6 222 aaKnown RBP2.15□□□□□ -2.07
VPS13C-210ENST00000561258 PIAS1O75925 651 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 TFF1P04155 84 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 PIPP12273 146 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-210ENST00000561258 TMEM78Q5T7P6 136 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 NUP35Q8NFH5 326 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 OR10J5Q8NHC4 309 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 MYOZ3Q8TDC0 251 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 DYNLRB2Q8TF09 96 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 PLEKHB2Q96CS7 222 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 TEX37Q96LM6 180 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 TMEM126AQ9H061 195 aa2.15□□□□□ -2.07
VPS13C-210ENST00000561258 CACYBPQ9HB71 228 aaKnown RBP2.15□□□□□ -2.07
VPS13C-210ENST00000561258 DEFB131BA0A096LNP1 70 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 C7orf71A4D174 169 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 DEFB4AO15263 64 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 SMIM24O75264 130 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 RBP4P02753 201 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 DBIP07108 87 aaKnown RBP2.14□□□□□ -2.07
VPS13C-210ENST00000561258 LTC4SQ16873 150 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 C10orf128Q5T292 105 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 RPS27LQ71UM5 84 aaKnown RBP2.14□□□□□ -2.07
VPS13C-210ENST00000561258 FAM24BQ8N5W8 94 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 OR4D11Q8NGI4 311 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 CANT1Q8WVQ1 401 aa2.14□□□□□ -2.07
VPS13C-210ENST00000561258 YIPF3Q9GZM5 350 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms