RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 MAP1LC3AQ9H492 121 aa4.6□□□□□ -1.67
SPG11-221ENST00000560299 JPT2Q9H910 190 aa4.6□□□□□ -1.67
SPG11-221ENST00000560299 DKK2Q9UBU2 259 aa4.6□□□□□ -1.67
SPG11-221ENST00000560299 KIF25-AS1Q9Y6Z4 181 aa4.6□□□□□ -1.67
SPG11-221ENST00000560299 U3KQK5 164 aa4.6□□□□□ -1.67
SPG11-221ENST00000560299 TNFRSF6BO95407 300 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 IGHV3-53P01767 116 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 PMCHP20382 165 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 NDUFA6P56556 154 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 LINC00315P59091 139 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 LINC00612Q8N6U2 182 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 C20orf78Q9BR46 151 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 SAMD10Q9BYL1 202 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 EDA2RQ9HAV5 297 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 ST20Q9HBF5 79 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 NXT2Q9NPJ8 142 aaKnown RBP4.59□□□□□ -1.67
SPG11-221ENST00000560299 NIT2Q9NQR4 276 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 TNFRSF18Q9Y5U5 241 aa4.59□□□□□ -1.67
SPG11-221ENST00000560299 IGHV3-73A0A0B4J1V6 119 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 TRAV26-2A0A0B4J265 109 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 TRBV10-1A0A0K0K1A3 114 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 TRBV6-4A0A1B0GX49 114 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 SMKR1H3BMG3 65 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 DEFB4AO15263 64 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 TCAPO15273 167 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 NCR2O95944 276 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 ATP5G1P05496 136 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 G0S2P27469 103 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 SUMO2P61956 95 aaKnown RBP4.58□□□□□ -1.68
SPG11-221ENST00000560299 SUMO4Q6EEV6 95 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 UFSP1Q6NVU6 142 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 FA2HQ7L5A8 372 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 C18orf32Q8TCD1 76 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 ZNF479Q96JC4 524 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 DNAJC30Q96LL9 226 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 PRADC1Q9BSG0 188 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 RETNQ9HD89 108 aa4.58□□□□□ -1.68
SPG11-221ENST00000560299 NACAE9PAV3 2078 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 TRBV6-5A0A0K0K1A5 114 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 LOC389332A0A1B0GUA5 103 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 PRSS47A8MTI9 375 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 FAM229AH3BQW9 127 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 K7EMI3 77 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 K7EQD1 137 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 M0QY20 66 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 VCYO14598 125 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 HSBP1O75506 76 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 NPYP01303 97 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 LINC00614P0C842 121 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 S100A2P29034 98 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 RPL32P62910 135 aaKnown RBP4.57□□□□□ -1.68
SPG11-221ENST00000560299 RPL36AP83881 106 aaKnown RBP4.57□□□□□ -1.68
SPG11-221ENST00000560299 RHOHQ15669 191 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 COA6Q5JTJ3 125 aaKnown RBP4.57□□□□□ -1.68
SPG11-221ENST00000560299 C11orf45Q8TAV5 145 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 RPL36ALQ969Q0 106 aaKnown RBP4.57□□□□□ -1.68
SPG11-221ENST00000560299 CHCHD1Q96BP2 118 aaKnown RBP4.57□□□□□ -1.68
SPG11-221ENST00000560299 WWC2-AS2Q96NR7 200 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 KIR2DL4Q99706 377 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 AP5S1Q9NUS5 200 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 PRO0255Q9UI72 69 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 HHLA3Q9XRX5 114 aa4.57□□□□□ -1.68
SPG11-221ENST00000560299 A0A0J9YWU9 116 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 LINC01549A6NIU2 74 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 GATA1P15976 413 aaPredicted RBP4.56□□□□□ -1.68
SPG11-221ENST00000560299 SNRPEP62304 92 aaKnown RBP4.56□□□□□ -1.68
SPG11-221ENST00000560299 IQCJQ1A5X6 159 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 ORMDL2Q53FV1 153 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 RNASEKQ6P5S7 137 aaKnown RBP4.56□□□□□ -1.68
SPG11-221ENST00000560299 NIT1Q86X76 327 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 Q8N8P6 123 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 NRACQ8N912 160 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 RPL39LQ96EH5 51 aaKnown RBP4.56□□□□□ -1.68
SPG11-221ENST00000560299 SMIM2Q9BVW6 85 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 KRTAP4-2Q9BYR5 136 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 DNAH7Q8WXX0 4024 aa4.56□□□□□ -1.68
SPG11-221ENST00000560299 TRBV7-3A0A075B6L6 115 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 TRBV27A0A0K0K1C4 114 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 SDHAF1A6NFY7 115 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 C5orf52A6NGY3 159 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 F5H768 121 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 I3L3M4 83 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 SERF1AO75920 110 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 ESDP10768 282 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 HOXA5P20719 270 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 FCER1GP30273 86 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 IFI27P40305 119 aaPredicted RBP4.55□□□□□ -1.68
SPG11-221ENST00000560299 POLR2KP53803 58 aaKnown RBP4.55□□□□□ -1.68
SPG11-221ENST00000560299 FHL2Q14192 279 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 SH2D6Q7Z4S9 175 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 DAZ4Q86SG3 579 aaKnown RBP4.55□□□□□ -1.68
SPG11-221ENST00000560299 SLC25A29Q8N8R3 303 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 NEXN-AS1Q8NBZ9 246 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 ZNRF2Q8NHG8 242 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 TMEM18Q96B42 140 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 TMEM70Q9BUB7 260 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 DAZ3Q9NR90 486 aaKnown RBP4.55□□□□□ -1.68
SPG11-221ENST00000560299 CELA1Q9UNI1 258 aa4.55□□□□□ -1.68
SPG11-221ENST00000560299 C3orf84H3BNL1 204 aa4.54□□□□□ -1.68
SPG11-221ENST00000560299 GAS8-AS1O95177 125 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms