RNA–Protein interactions for RNA: ENST00000555353.5

FOXN3-209, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 1,595 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-209ENST00000555353 TRAPPC1Q9Y5R8 145 aa14.27□□□□□ -0.12
FOXN3-209ENST00000555353 RPS10P46783 165 aaKnown RBP14.26□□□□□ -0.13
FOXN3-209ENST00000555353 APCSP02743 223 aa14.26□□□□□ -0.13
FOXN3-209ENST00000555353 RAB4AP20338 218 aa14.26□□□□□ -0.13
FOXN3-209ENST00000555353 LINC00315P59091 139 aa14.26□□□□□ -0.13
FOXN3-209ENST00000555353 MRAP2Q96G30 205 aa14.26□□□□□ -0.13
FOXN3-209ENST00000555353 ICOSQ9Y6W8 199 aa14.26□□□□□ -0.13
FOXN3-209ENST00000555353 H7C1H1 209 aa14.25□□□□□ -0.13
FOXN3-209ENST00000555353 RNF185Q96GF1 192 aa14.25□□□□□ -0.13
FOXN3-209ENST00000555353 MRPL18Q9H0U6 180 aaKnown RBP14.25□□□□□ -0.13
FOXN3-209ENST00000555353 KMT2AQ03164 3969 aa14.24□□□□□ -0.13
FOXN3-209ENST00000555353 A0A096LPF7 62 aa14.24□□□□□ -0.13
FOXN3-209ENST00000555353 FABP9Q0Z7S8 132 aa14.24□□□□□ -0.13
FOXN3-209ENST00000555353 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.24□□□□□ -0.13
FOXN3-209ENST00000555353 PPBPP02775 128 aa14.23□□□□□ -0.13
FOXN3-209ENST00000555353 MRPL23Q16540 153 aaKnown RBP14.23□□□□□ -0.13
FOXN3-209ENST00000555353 MRPL51Q4U2R6 128 aaKnown RBP14.23□□□□□ -0.13
FOXN3-209ENST00000555353 GATA1P15976 413 aaPredicted RBP14.22□□□□□ -0.13
FOXN3-209ENST00000555353 CKS2P33552 79 aa14.22□□□□□ -0.13
FOXN3-209ENST00000555353 SUMO4Q6EEV6 95 aa14.22□□□□□ -0.13
FOXN3-209ENST00000555353 LINC00588Q9Y4M8 146 aa14.22□□□□□ -0.13
FOXN3-209ENST00000555353 TRBV6-4A0A1B0GX49 114 aa14.22□□□□□ -0.13
FOXN3-209ENST00000555353 GYPEP15421 78 aa14.22□□□□□ -0.13
FOXN3-209ENST00000555353 K7EQD1 137 aa14.21□□□□□ -0.14
FOXN3-209ENST00000555353 PPP1R17O96001 155 aa14.21□□□□□ -0.14
FOXN3-209ENST00000555353 RHOHQ15669 191 aa14.21□□□□□ -0.14
FOXN3-209ENST00000555353 ORMDL3Q8N138 153 aa14.21□□□□□ -0.14
FOXN3-209ENST00000555353 PRADC1Q9BSG0 188 aa14.21□□□□□ -0.14
FOXN3-209ENST00000555353 SRIP30626 198 aa14.2□□□□□ -0.14
FOXN3-209ENST00000555353 ESRGQ1W209 222 aa14.2□□□□□ -0.14
FOXN3-209ENST00000555353 TRAV26-2A0A0B4J265 109 aa14.19□□□□□ -0.14
FOXN3-209ENST00000555353 TRBV10-1A0A0K0K1A3 114 aa14.19□□□□□ -0.14
FOXN3-209ENST00000555353 D6R8Y8 96 aa14.19□□□□□ -0.14
FOXN3-209ENST00000555353 M0QY20 66 aa14.19□□□□□ -0.14
FOXN3-209ENST00000555353 SLC25A29Q8N8R3 303 aa14.19□□□□□ -0.14
FOXN3-209ENST00000555353 IGLV2-18A0A075B6J9 118 aa14.18□□□□□ -0.14
FOXN3-209ENST00000555353 Q6ZSN1 163 aa14.18□□□□□ -0.14
FOXN3-209ENST00000555353 NEGR1Q7Z3B1 354 aa14.18□□□□□ -0.14
FOXN3-209ENST00000555353 TRGC2P03986 189 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 KIAA1644Q3SXP7 199 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 PRELID3AQ96N28 172 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 LAMTOR2Q9Y2Q5 125 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 M0R2N4 97 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 NCR2O95944 276 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 ZNRF2Q8NHG8 242 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 NIT2Q9NQR4 276 aa14.17□□□□□ -0.14
FOXN3-209ENST00000555353 LOC100131303A0A0U1RQF7 123 aa14.16□□□□□ -0.14
FOXN3-209ENST00000555353 SMKR1H3BMG3 65 aa14.16□□□□□ -0.14
FOXN3-209ENST00000555353 RPL36AP83881 106 aaKnown RBP14.16□□□□□ -0.14
FOXN3-209ENST00000555353 OR10J3Q5JRS4 329 aa14.16□□□□□ -0.14
FOXN3-209ENST00000555353 RPL36ALQ969Q0 106 aaKnown RBP14.16□□□□□ -0.14
FOXN3-209ENST00000555353 DNAJC30Q96LL9 226 aa14.16□□□□□ -0.14
FOXN3-209ENST00000555353 MRPS16Q9Y3D3 137 aaKnown RBP14.16□□□□□ -0.14
FOXN3-209ENST00000555353 TNFRSF18Q9Y5U5 241 aa14.16□□□□□ -0.14
FOXN3-209ENST00000555353 PHOX2AO14813 284 aa14.15□□□□□ -0.14
FOXN3-209ENST00000555353 SH2D6Q7Z4S9 175 aa14.15□□□□□ -0.14
FOXN3-209ENST00000555353 UPK3BQ9BT76 320 aa14.14□□□□□ -0.15
FOXN3-209ENST00000555353 DNAH6Q9C0G6 4158 aa14.14□□□□□ -0.15
FOXN3-209ENST00000555353 TNFRSF6BO95407 300 aa14.13□□□□□ -0.15
FOXN3-209ENST00000555353 LYPD5Q6UWN5 251 aa14.13□□□□□ -0.15
FOXN3-209ENST00000555353 NEXN-AS1Q8NBZ9 246 aa14.13□□□□□ -0.15
FOXN3-209ENST00000555353 Q9H8V8 135 aa14.13□□□□□ -0.15
FOXN3-209ENST00000555353 RPL39LQ96EH5 51 aaKnown RBP14.13□□□□□ -0.15
FOXN3-209ENST00000555353 ALKBH7Q9BT30 221 aaPredicted RBP14.13□□□□□ -0.15
FOXN3-209ENST00000555353 ST20Q9HBF5 79 aa14.13□□□□□ -0.15
FOXN3-209ENST00000555353 TRBV7-3A0A075B6L6 115 aa14.12□□□□□ -0.15
FOXN3-209ENST00000555353 TRBV6-5A0A0K0K1A5 114 aa14.12□□□□□ -0.15
FOXN3-209ENST00000555353 NPYP01303 97 aa14.12□□□□□ -0.15
FOXN3-209ENST00000555353 NRACQ8N912 160 aa14.12□□□□□ -0.15
FOXN3-209ENST00000555353 C20orf78Q9BR46 151 aa14.12□□□□□ -0.15
FOXN3-209ENST00000555353 GAGE12JA6NER3 117 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 C1orf196B1AJZ1 125 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 GAS8-AS1O95177 125 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 GAGE1Q13065 139 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 GAGE4Q13068 117 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 GAGE5Q13069 117 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 GAGE13Q4V321 117 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 MAP1LC3AQ9H492 121 aa14.11□□□□□ -0.15
FOXN3-209ENST00000555353 SUMO2P61956 95 aaKnown RBP14.1□□□□□ -0.15
FOXN3-209ENST00000555353 Q6ZR54 194 aa14.1□□□□□ -0.15
FOXN3-209ENST00000555353 NBDYA0A0U1RRE5 68 aa14.09□□□□□ -0.15
FOXN3-209ENST00000555353 SDHAF1A6NFY7 115 aa14.08□□□□□ -0.16
FOXN3-209ENST00000555353 SIVA1O15304 175 aa14.07□□□□□ -0.16
FOXN3-209ENST00000555353 DAZ4Q86SG3 579 aaKnown RBP14.07□□□□□ -0.16
FOXN3-209ENST00000555353 ATP6V0E2Q8NHE4 81 aa14.07□□□□□ -0.16
FOXN3-209ENST00000555353 TMEM70Q9BUB7 260 aa14.07□□□□□ -0.16
FOXN3-209ENST00000555353 DAZ3Q9NR90 486 aaKnown RBP14.07□□□□□ -0.16
FOXN3-209ENST00000555353 Q9UF83 564 aa14.07□□□□□ -0.16
FOXN3-209ENST00000555353 VCYO14598 125 aa14.06□□□□□ -0.16
FOXN3-209ENST00000555353 PMCHP20382 165 aa14.06□□□□□ -0.16
FOXN3-209ENST00000555353 UBE2D3P61077 147 aa14.06□□□□□ -0.16
FOXN3-209ENST00000555353 UBE2D2P62837 147 aa14.06□□□□□ -0.16
FOXN3-209ENST00000555353 RPL32P62910 135 aaKnown RBP14.06□□□□□ -0.16
FOXN3-209ENST00000555353 TTC32Q5I0X7 151 aa14.06□□□□□ -0.16
FOXN3-209ENST00000555353 PRSS47A8MTI9 375 aa14.05□□□□□ -0.16
FOXN3-209ENST00000555353 TIRAPP58753 221 aa14.05□□□□□ -0.16
FOXN3-209ENST00000555353 RAB5BP61020 215 aa14.05□□□□□ -0.16
FOXN3-209ENST00000555353 SMIM2Q9BVW6 85 aa14.05□□□□□ -0.16
FOXN3-209ENST00000555353 NXT2Q9NPJ8 142 aaKnown RBP14.05□□□□□ -0.16
FOXN3-209ENST00000555353 LOC389332A0A1B0GUA5 103 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms