RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 LINC00482Q8N8I6 264 aa9.31□□□□□ -0.92
VIPAS39-206ENST00000553888 VAMP8Q9BV40 100 aa9.31□□□□□ -0.92
VIPAS39-206ENST00000553888 ZNF876PQ49A33 203 aa9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 LINC01587Q99440 93 aa9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 CSDC2Q9Y534 153 aaKnown RBP9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 F5H697 171 aa9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 RPL35AP18077 110 aaKnown RBP9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 TRPT1Q86TN4 253 aaKnown RBP9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 MRAP2Q96G30 205 aa9.3□□□□□ -0.92
VIPAS39-206ENST00000553888 IGHV3-73A0A0B4J1V6 119 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 SUMO4Q6EEV6 95 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 C19orf73Q9NVV2 129 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 LAMTOR2Q9Y2Q5 125 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 HBDP02042 147 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 SMIM17P0DL12 118 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 Q8N8P6 123 aa9.29□□□□□ -0.92
VIPAS39-206ENST00000553888 KIR2DL5BA0A0G2JN68 375 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 KIR2DL5BA0A0G2JPC4 375 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 KIR2DL5AQ8N109 375 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 TMEM158Q8WZ71 300 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 MAP1LC3CQ9BXW4 147 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 FBN1P35555 2871 aaKnown RBP9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 TRGV11A0A075B6L2 103 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 CRYGDP07320 174 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 OXLD1Q5BKU9 147 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 C1orf158Q8N1D5 194 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 NXT2Q9NPJ8 142 aaKnown RBP9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 HSPB8Q9UJY1 196 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 INSP01308 110 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 SPATA45Q537H7 98 aa9.28□□□□□ -0.92
VIPAS39-206ENST00000553888 GIG44P09565 113 aaPredicted RBP9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 SUMO2P61956 95 aaKnown RBP9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 ZNF56Q15929 161 aa9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 BEAN1Q3B7T3 259 aa9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 SMIM2Q9BVW6 85 aa9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 hDV102S1A0JD36 115 aa9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 STPG4Q8N801 248 aa9.27□□□□□ -0.93
VIPAS39-206ENST00000553888 LINC01546A6NGU7 62 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 DEFB125Q8N687 156 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 C11orf72Q8NBR9 251 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 B5MCH6 92 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 TIRAPP58753 221 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 MORN3Q6PF18 240 aaPredicted RBP9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 SYT8Q8NBV8 401 aa9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 MRPL16Q9NX20 251 aaKnown RBP9.26□□□□□ -0.93
VIPAS39-206ENST00000553888 NBEAL2Q6ZNJ1 2754 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 TCTAP57738 103 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 VAMP3Q15836 100 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 POM121L12Q8N7R1 296 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 P0DMU3 169 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 FAM231AP0DMU4 169 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 FAM231CP0DMU5 169 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 FCER1GP30273 86 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 Q9UF83 564 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 COX11Q9Y6N1 276 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 IGLL1P15814 213 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 LAGE3Q14657 143 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 IFI27L1Q96BM0 104 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 SIGMAR1Q99720 223 aa9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 NAA38Q9BRA0 125 aaKnown RBP9.25□□□□□ -0.93
VIPAS39-206ENST00000553888 G3V4G9 280 aa9.24□□□□□ -0.93
VIPAS39-206ENST00000553888 ZNF415Q09FC8 603 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 LINC01545Q5VT33 79 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 C20orf144Q9BQM9 153 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 TRAV9-2A0A087WT02 112 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 NUDT3O95989 172 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 Q6ZSN1 163 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 DKK2Q9UBU2 259 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 STAB1Q9NY15 2570 aa9.23□□□□□ -0.93
VIPAS39-206ENST00000553888 F5H768 121 aa9.22□□□□□ -0.93
VIPAS39-206ENST00000553888 M0QY20 66 aa9.22□□□□□ -0.93
VIPAS39-206ENST00000553888 M0R2P5 195 aa9.22□□□□□ -0.93
VIPAS39-206ENST00000553888 C20orf78Q9BR46 151 aa9.22□□□□□ -0.93
VIPAS39-206ENST00000553888 ST20Q9HBF5 79 aa9.22□□□□□ -0.93
VIPAS39-206ENST00000553888 MTURNQ8N3F0 131 aa9.21□□□□□ -0.93
VIPAS39-206ENST00000553888 SDHAF1A6NFY7 115 aa9.21□□□□□ -0.94
VIPAS39-206ENST00000553888 GAGE12BA1L429 117 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 SMIM9A6NGZ8 99 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 IGLC3P0DOY3 106 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 CMYA5Q8N3K9 4069 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 POLR2KP53803 58 aaKnown RBP9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 KRTAP24-1Q3LI83 254 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 CFAP126Q5VTH2 177 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 RNF183Q96D59 192 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 MIEN1Q9BRT3 115 aa9.2□□□□□ -0.94
VIPAS39-206ENST00000553888 PRSS1P07477 247 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 GAGE5Q13069 117 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 GAGE6Q13070 117 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 UFSP1Q6NVU6 142 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 A0A0U1RRA0 63 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 RPL39P62891 51 aaKnown RBP9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 Q6ZTI0 123 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 LINC00467Q9BRT7 94 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 PKD1L1Q8TDX9 2849 aa9.19□□□□□ -0.94
VIPAS39-206ENST00000553888 TRGV1A0A0A0MS02 117 aa9.18□□□□□ -0.94
VIPAS39-206ENST00000553888 CSNK1G2-AS1Q8NCQ2 148 aa9.18□□□□□ -0.94
VIPAS39-206ENST00000553888 IGHV3-53P01767 116 aa9.18□□□□□ -0.94
VIPAS39-206ENST00000553888 C2orf66Q6UXQ4 117 aa9.18□□□□□ -0.94
VIPAS39-206ENST00000553888 CMC4P56277 68 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms