RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 ST20Q9HBF5 79 aa21.68■■□□□ 1.06
CCM2-219ENST00000544363 TRBV6-5A0A0K0K1A5 114 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 DEFB4AO15263 64 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 CIDEAO60543 219 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 FAM19A2Q8N3H0 131 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 SMIM2Q9BVW6 85 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 RETNQ9HD89 108 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 NIT2Q9NQR4 276 aa21.67■■□□□ 1.06
CCM2-219ENST00000544363 AMTP48728 403 aa21.66■■□□□ 1.06
CCM2-219ENST00000544363 FAM222AQ5U5X8 452 aa21.66■■□□□ 1.06
CCM2-219ENST00000544363 PACRGQ96M98 296 aaPredicted RBP21.66■■□□□ 1.06
CCM2-219ENST00000544363 C18orf15Q96N68 181 aa21.66■■□□□ 1.06
CCM2-219ENST00000544363 NBEAL1Q6ZS30 2694 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 LINC01546A6NGU7 62 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 DEFB130BP0DP73 79 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 DEFB130AP0DP74 79 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 DEFB121Q5J5C9 76 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 DKK2Q9UBU2 259 aa21.65■■□□□ 1.06
CCM2-219ENST00000544363 AKR1D1P51857 326 aa21.64■■□□□ 1.05
CCM2-219ENST00000544363 RPL32P62910 135 aaKnown RBP21.64■■□□□ 1.05
CCM2-219ENST00000544363 SBSPONQ8IVN8 264 aa21.63■■□□□ 1.05
CCM2-219ENST00000544363 IGHV1-24A0A0C4DH33 117 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 P0DMU3 169 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 FAM231AP0DMU4 169 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 FAM231CP0DMU5 169 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 POLR2KP53803 58 aaKnown RBP21.62■■□□□ 1.05
CCM2-219ENST00000544363 TMEM70Q9BUB7 260 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 PMCHL1Q16048 86 aa21.62■■□□□ 1.05
CCM2-219ENST00000544363 SDHAF1A6NFY7 115 aa21.61■■□□□ 1.05
CCM2-219ENST00000544363 OR10D4PQ8NGN7 298 aa21.61■■□□□ 1.05
CCM2-219ENST00000544363 VCYO14598 125 aa21.58■■□□□ 1.04
CCM2-219ENST00000544363 SPART-AS1P0CW21 52 aa21.58■■□□□ 1.04
CCM2-219ENST00000544363 NEXN-AS1Q8NBZ9 246 aa21.58■■□□□ 1.04
CCM2-219ENST00000544363 DNAJC30Q96LL9 226 aa21.58■■□□□ 1.04
CCM2-219ENST00000544363 TCAPO15273 167 aa21.57■■□□□ 1.04
CCM2-219ENST00000544363 FHL2Q14192 279 aa21.57■■□□□ 1.04
CCM2-219ENST00000544363 Q9UF83 564 aa21.57■■□□□ 1.04
CCM2-219ENST00000544363 CELA1Q9UNI1 258 aa21.57■■□□□ 1.04
CCM2-219ENST00000544363 TNFRSF18Q9Y5U5 241 aa21.57■■□□□ 1.04
CCM2-219ENST00000544363 TRGV4A0A0C4DH28 118 aa21.56■■□□□ 1.04
CCM2-219ENST00000544363 TRBV27A0A0K0K1C4 114 aa21.56■■□□□ 1.04
CCM2-219ENST00000544363 K7EQD1 137 aa21.56■■□□□ 1.04
CCM2-219ENST00000544363 K7EMI3 77 aa21.55■■□□□ 1.04
CCM2-219ENST00000544363 LAGE3Q14657 143 aa21.55■■□□□ 1.04
CCM2-219ENST00000544363 NEGR1Q7Z3B1 354 aa21.55■■□□□ 1.04
CCM2-219ENST00000544363 SLC25A29Q8N8R3 303 aa21.55■■□□□ 1.04
CCM2-219ENST00000544363 DAD1P61803 113 aa21.55■■□□□ 1.04
CCM2-219ENST00000544363 A0A096LNJ9 63 aa21.54■■□□□ 1.04
CCM2-219ENST00000544363 TRBV10-1A0A0K0K1A3 114 aa21.54■■□□□ 1.04
CCM2-219ENST00000544363 SPATA25Q9BR10 227 aa21.54■■□□□ 1.04
CCM2-219ENST00000544363 TM2D3Q9BRN9 247 aa21.54■■□□□ 1.04
CCM2-219ENST00000544363 TEX48A0A1B0GUV7 120 aa21.53■■□□□ 1.04
CCM2-219ENST00000544363 TRBV6-4A0A1B0GX49 114 aa21.53■■□□□ 1.04
CCM2-219ENST00000544363 MRAPQ8TCY5 172 aa21.53■■□□□ 1.04
CCM2-219ENST00000544363 C11orf68Q9H3H3 251 aaKnown RBP21.53■■□□□ 1.04
CCM2-219ENST00000544363 HBDP02042 147 aa21.52■■□□□ 1.04
CCM2-219ENST00000544363 KIR2DL4Q99706 377 aa21.52■■□□□ 1.04
CCM2-219ENST00000544363 FCER1GP30273 86 aa21.51■■□□□ 1.03
CCM2-219ENST00000544363 LEPROTL1O95214 131 aa21.51■■□□□ 1.03
CCM2-219ENST00000544363 ORMDL2Q53FV1 153 aa21.51■■□□□ 1.03
CCM2-219ENST00000544363 I3L3M4 83 aa21.5■■□□□ 1.03
CCM2-219ENST00000544363 DNHD1Q96M86 4753 aa21.48■■□□□ 1.03
CCM2-219ENST00000544363 TRBV7-3A0A075B6L6 115 aa21.47■■□□□ 1.03
CCM2-219ENST00000544363 RPL36AP83881 106 aaKnown RBP21.47■■□□□ 1.03
CCM2-219ENST00000544363 RHOHQ15669 191 aa21.47■■□□□ 1.03
CCM2-219ENST00000544363 ZNRF2Q8NHG8 242 aa21.47■■□□□ 1.03
CCM2-219ENST00000544363 RPL36ALQ969Q0 106 aaKnown RBP21.47■■□□□ 1.03
CCM2-219ENST00000544363 HHLA3Q9XRX5 114 aa21.47■■□□□ 1.03
CCM2-219ENST00000544363 NUDT3O95989 172 aa21.47■■□□□ 1.03
CCM2-219ENST00000544363 DEFB104AQ8WTQ1 72 aa21.46■■□□□ 1.03
CCM2-219ENST00000544363 PRADC1Q9BSG0 188 aa21.46■■□□□ 1.03
CCM2-219ENST00000544363 HSPB8Q9UJY1 196 aa21.46■■□□□ 1.03
CCM2-219ENST00000544363 ATP5G1P05496 136 aa21.45■■□□□ 1.02
CCM2-219ENST00000544363 TSHBP01222 138 aa21.44■■□□□ 1.02
CCM2-219ENST00000544363 BTF3P20290 206 aaKnown RBP21.44■■□□□ 1.02
CCM2-219ENST00000544363 LINC00173Q6ZV60 143 aa21.44■■□□□ 1.02
CCM2-219ENST00000544363 A0A0J9YWU9 116 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 GAGE12JA6NER3 117 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 GAGE1Q13065 139 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 GAGE4Q13068 117 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 GAGE5Q13069 117 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 GAGE13Q4V321 117 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 PRO0255Q9UI72 69 aa21.43■■□□□ 1.02
CCM2-219ENST00000544363 CRYBA4P53673 196 aa21.42■■□□□ 1.02
CCM2-219ENST00000544363 KRTDAPP60985 99 aa21.42■■□□□ 1.02
CCM2-219ENST00000544363 LOC100131303A0A0U1RQF7 123 aa21.41■■□□□ 1.02
CCM2-219ENST00000544363 C3orf79P0CE67 100 aa21.41■■□□□ 1.02
CCM2-219ENST00000544363 UBE2D3P61077 147 aa21.41■■□□□ 1.02
CCM2-219ENST00000544363 UBE2D2P62837 147 aa21.41■■□□□ 1.02
CCM2-219ENST00000544363 C12orf74Q32Q52 190 aa21.41■■□□□ 1.02
CCM2-219ENST00000544363 PHLDA1Q8WV24 401 aaPredicted RBP21.41■■□□□ 1.02
CCM2-219ENST00000544363 PYY3Q5JQD4 70 aa21.4■■□□□ 1.02
CCM2-219ENST00000544363 G0S2P27469 103 aa21.4■■□□□ 1.02
CCM2-219ENST00000544363 JOSD1Q15040 202 aaPredicted RBP21.4■■□□□ 1.02
CCM2-219ENST00000544363 ZMAT4Q9H898 229 aa21.4■■□□□ 1.02
CCM2-219ENST00000544363 IGHV3-38A0A0C4DH36 116 aa21.39■■□□□ 1.01
CCM2-219ENST00000544363 DAZ4Q86SG3 579 aaKnown RBP21.39■■□□□ 1.01
CCM2-219ENST00000544363 TOMM6Q96B49 74 aa21.39■■□□□ 1.01
CCM2-219ENST00000544363 DAZ3Q9NR90 486 aaKnown RBP21.39■■□□□ 1.01
CCM2-219ENST00000544363 C2orf66Q6UXQ4 117 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 226 ms