RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RBMY1FQ15415 496 aaKnown RBP10.49□□□□□ -0.73
VPS33A-209ENST00000544349 RNASE8Q8TDE3 154 aaKnown RBP10.49□□□□□ -0.73
VPS33A-209ENST00000544349 NAA38Q9BRA0 125 aaKnown RBP10.49□□□□□ -0.73
VPS33A-209ENST00000544349 BEAN1Q3B7T3 259 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 DEFB104AQ8WTQ1 72 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 C20orf78Q9BR46 151 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 IGHV3-16A0A0C4DH30 117 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 STHQ8IWL8 128 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 Q8N1Y9 231 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 TOMM6Q96B49 74 aa10.48□□□□□ -0.73
VPS33A-209ENST00000544349 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.47□□□□□ -0.73
VPS33A-209ENST00000544349 POM121L12Q8N7R1 296 aa10.47□□□□□ -0.73
VPS33A-209ENST00000544349 FAM110AQ9BQ89 295 aa10.47□□□□□ -0.73
VPS33A-209ENST00000544349 A0A087WWL8 130 aa10.46□□□□□ -0.73
VPS33A-209ENST00000544349 ORMDL2Q53FV1 153 aa10.46□□□□□ -0.73
VPS33A-209ENST00000544349 TRPT1Q86TN4 253 aaKnown RBP10.46□□□□□ -0.73
VPS33A-209ENST00000544349 C9orf85Q96MD7 179 aa10.46□□□□□ -0.73
VPS33A-209ENST00000544349 CHAC1Q9BUX1 264 aa10.46□□□□□ -0.73
VPS33A-209ENST00000544349 MDFICQ9P1T7 246 aa10.46□□□□□ -0.73
VPS33A-209ENST00000544349 FXYD2P54710 66 aa10.46□□□□□ -0.74
VPS33A-209ENST00000544349 SUMO4Q6EEV6 95 aa10.46□□□□□ -0.74
VPS33A-209ENST00000544349 MAPKAPK5-AS1Q8N8E1 139 aa10.46□□□□□ -0.74
VPS33A-209ENST00000544349 SCGB3A1Q96QR1 104 aa10.46□□□□□ -0.74
VPS33A-209ENST00000544349 CSTL1Q9H114 145 aa10.46□□□□□ -0.74
VPS33A-209ENST00000544349 TRBV25-1A0A075B6N4 114 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 C2orf66Q6UXQ4 117 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 C19orf73Q9NVV2 129 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 TRGV11A0A075B6L2 103 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 TRAV12-1A0A0B4J245 112 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 A6NDN8 102 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 NEXN-AS1Q8NBZ9 246 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 RAB37Q96AX2 223 aa10.45□□□□□ -0.74
VPS33A-209ENST00000544349 F8VRH5 84 aa10.44□□□□□ -0.74
VPS33A-209ENST00000544349 H3BRM9 83 aa10.44□□□□□ -0.74
VPS33A-209ENST00000544349 SPATA3Q8NHX4 192 aa10.44□□□□□ -0.74
VPS33A-209ENST00000544349 BAALCQ8WXS3 180 aa10.44□□□□□ -0.74
VPS33A-209ENST00000544349 HIGD1BQ9P298 99 aa10.44□□□□□ -0.74
VPS33A-209ENST00000544349 C9orf118A6NHY6 69 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 H3BUT2 72 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 K7EMI3 77 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 GCSHP23434 173 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 PLNP26678 52 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 INSL3P51460 131 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 CHTOPQ9Y3Y2 248 aaKnown RBP10.43□□□□□ -0.74
VPS33A-209ENST00000544349 H7C1H1 209 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 K7ERJ3 54 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 INSP01308 110 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 KRTAP21-3Q3LHN1 58 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 WFDC10AQ9H1F0 79 aa10.43□□□□□ -0.74
VPS33A-209ENST00000544349 C9orf66Q5T8R8 295 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 HTN1P15515 57 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 KRTAP24-1Q3LI83 254 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 FAM74A4Q5TZK3 123 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 LINC00467Q9BRT7 94 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 XCL2Q9UBD3 114 aa10.42□□□□□ -0.74
VPS33A-209ENST00000544349 TSHBP01222 138 aa10.41□□□□□ -0.74
VPS33A-209ENST00000544349 UFSP1Q6NVU6 142 aa10.41□□□□□ -0.74
VPS33A-209ENST00000544349 LINC01587Q99440 93 aa10.41□□□□□ -0.74
VPS33A-209ENST00000544349 PRM2P04554 102 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 POLR2KP53803 58 aaKnown RBP10.4□□□□□ -0.74
VPS33A-209ENST00000544349 RBX1P62877 108 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 MORN3Q6PF18 240 aaPredicted RBP10.4□□□□□ -0.74
VPS33A-209ENST00000544349 SYT8Q8NBV8 401 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 TP53TG1Q9Y2A0 90 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 PRSS29PA6NIE9 313 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 F5H697 171 aa10.4□□□□□ -0.74
VPS33A-209ENST00000544349 RPL39P62891 51 aaKnown RBP10.4□□□□□ -0.74
VPS33A-209ENST00000544349 CRYGDP07320 174 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 ZFP2Q6ZN57 461 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 C1orf158Q8N1D5 194 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 SDHAF1A6NFY7 115 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 PPP1R17O96001 155 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 NACAE9PAV3 2078 aa10.39□□□□□ -0.75
VPS33A-209ENST00000544349 K7EP34 96 aa10.38□□□□□ -0.75
VPS33A-209ENST00000544349 RPL32P62910 135 aaKnown RBP10.38□□□□□ -0.75
VPS33A-209ENST00000544349 CEND1Q8N111 149 aa10.38□□□□□ -0.75
VPS33A-209ENST00000544349 CST9LQ9H4G1 147 aa10.38□□□□□ -0.75
VPS33A-209ENST00000544349 JMJD1CQ15652 2540 aa10.38□□□□□ -0.75
VPS33A-209ENST00000544349 IGLV4-69A0A075B6H9 119 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 GAGE10A6NGK3 116 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 GIG44P09565 113 aaPredicted RBP10.37□□□□□ -0.75
VPS33A-209ENST00000544349 RPL35AP18077 110 aaKnown RBP10.37□□□□□ -0.75
VPS33A-209ENST00000544349 EMP1P54849 157 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 ZNF415Q09FC8 603 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 ZNF56Q15929 161 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 ZNF876PQ49A33 203 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 WFDC9Q8NEX5 89 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 PHLDA1Q8WV24 401 aaPredicted RBP10.37□□□□□ -0.75
VPS33A-209ENST00000544349 CYSLTR1Q9Y271 337 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 A0A1W2PPM0 123 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 IGIPA6NJ69 53 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 C11orf72Q8NBR9 251 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 TM2D2Q9BX73 214 aa10.37□□□□□ -0.75
VPS33A-209ENST00000544349 NHP2Q9NX24 153 aaKnown RBP10.37□□□□□ -0.75
VPS33A-209ENST00000544349 GAGE12BA1L429 117 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 OR11H2Q8NH07 326 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 IGHV3OR16-12A0A075B7B8 117 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 C11orf86A6NJI1 115 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 M0QY20 66 aa10.36□□□□□ -0.75
VPS33A-209ENST00000544349 SMIM13P0DJ93 91 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 558.7 ms