RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 POM121L12Q8N7R1 296 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 OR4C5Q8NGB2 326 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 MUC7Q8TAX7 377 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 DPH3P1Q9H4G8 78 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 RETNQ9HD89 108 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 NACAE9PAV3 2078 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 A0A0J9YWU9 116 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 RHODO00212 210 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 DEFB4AO15263 64 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 HLA-DQA1P01909 254 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 PPBPP02775 128 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 DEFB130BP0DP73 79 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 DEFB130AP0DP74 79 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 RAB4AP20338 218 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 RAB4BP61018 213 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 DAD1P61803 113 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 KRTAP15-1Q3LI76 137 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 UFSP1Q6NVU6 142 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 TMEM136Q6ZRR5 245 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 C14orf178Q8N769 122 aaPredicted RBP5.23□□□□□ -1.57
CD44-228ENST00000528455 C11orf45Q8TAV5 145 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 AP1S3Q96PC3 154 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 KRTAP4-2Q9BYR5 136 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 JPT2Q9H910 190 aa5.23□□□□□ -1.57
CD44-228ENST00000528455 MRPL16Q9NX20 251 aaKnown RBP5.23□□□□□ -1.57
CD44-228ENST00000528455 ATP5G1P05496 136 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 RAB5AP20339 215 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 C12orf74Q32Q52 190 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 CASC10Q5T4H9 136 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 ZNF479Q96JC4 524 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 SAMD10Q9BYL1 202 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 EDA2RQ9HAV5 297 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 HHLA3Q9XRX5 114 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 RYR3Q15413 4870 aa5.22□□□□□ -1.57
CD44-228ENST00000528455 TRBV6-4A0A1B0GX49 114 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 H7C1H1 209 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 PPP1R17O96001 155 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 IGHV3-53P01767 116 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 APCSP02743 223 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 TIRAPP58753 221 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 MRAP2Q96G30 205 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 RNF185Q96GF1 192 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 CELA1Q9UNI1 258 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 TRAPPC1Q9Y5R8 145 aa5.21□□□□□ -1.58
CD44-228ENST00000528455 TENM2Q9NT68 2774 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 TRGV4A0A0C4DH28 118 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 TRBV10-1A0A0K0K1A3 114 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 PRSS47A8MTI9 375 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 H3BNG1 76 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 M0QY20 66 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 GATA1P15976 413 aaPredicted RBP5.2□□□□□ -1.58
CD44-228ENST00000528455 CKS2P33552 79 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 RPS10P46783 165 aaKnown RBP5.2□□□□□ -1.58
CD44-228ENST00000528455 FABP9Q0Z7S8 132 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 MRPL51Q4U2R6 128 aaKnown RBP5.2□□□□□ -1.58
CD44-228ENST00000528455 FAM74A4Q5TZK3 123 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 AMN1Q8IY45 258 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 DNAJC30Q96LL9 226 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 NIT2Q9NQR4 276 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 PRO0255Q9UI72 69 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 LAMTOR2Q9Y2Q5 125 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 CSMD3Q7Z407 3707 aa5.2□□□□□ -1.58
CD44-228ENST00000528455 PHOX2AO14813 284 aa5.19□□□□□ -1.58
CD44-228ENST00000528455 CRYBA4P53673 196 aa5.19□□□□□ -1.58
CD44-228ENST00000528455 ZFAND6Q6FIF0 208 aa5.19□□□□□ -1.58
CD44-228ENST00000528455 ORMDL3Q8N138 153 aa5.19□□□□□ -1.58
CD44-228ENST00000528455 SLC25A29Q8N8R3 303 aa5.19□□□□□ -1.58
CD44-228ENST00000528455 IGHV3-73A0A0B4J1V6 119 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 TRAV10A0A0B4J240 114 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 TRBV6-5A0A0K0K1A5 114 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 F5H768 121 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 TRGC2P03986 189 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 NANOS2P60321 138 aaKnown RBP5.18□□□□□ -1.58
CD44-228ENST00000528455 ZNF56Q15929 161 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 SUMO4Q6EEV6 95 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 Q6ZTC4 211 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 C20orf78Q9BR46 151 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 PRADC1Q9BSG0 188 aa5.18□□□□□ -1.58
CD44-228ENST00000528455 ALKBH7Q9BT30 221 aaPredicted RBP5.18□□□□□ -1.58
CD44-228ENST00000528455 LYSTQ99698 3801 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 TRBV7-3A0A075B6L6 115 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 DEFB131BA0A096LNP1 70 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 TNFRSF6BO95407 300 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 NUDT3O95989 172 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 MGPP08493 103 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 POLR2KP53803 58 aaKnown RBP5.17□□□□□ -1.58
CD44-228ENST00000528455 RPL32P62910 135 aaKnown RBP5.17□□□□□ -1.58
CD44-228ENST00000528455 RHOHQ15669 191 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 SH2D6Q7Z4S9 175 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 NRACQ8N912 160 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 PRELID3AQ96N28 172 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 TNFRSF18Q9Y5U5 241 aa5.17□□□□□ -1.58
CD44-228ENST00000528455 DYNC2H1Q8NCM8 4307 aaKnown RBP5.16□□□□□ -1.58
CD44-228ENST00000528455 STARD9Q9P2P6 4700 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 D6R8Y8 96 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 K7EMI3 77 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 K7EQD1 137 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 VCYO14598 125 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 NPSP0C0P6 89 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 RPL36AP83881 106 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms