RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 RPL39P62891 51 aaKnown RBP11.26□□□□□ -0.61
USH1C-207ENST00000527720 DUX3Q96PT4 197 aa11.26□□□□□ -0.61
USH1C-207ENST00000527720 CST9LQ9H4G1 147 aa11.26□□□□□ -0.61
USH1C-207ENST00000527720 IGLV4-69A0A075B6H9 119 aa11.26□□□□□ -0.61
USH1C-207ENST00000527720 TRAV25A0A0B4J276 109 aa11.26□□□□□ -0.61
USH1C-207ENST00000527720 A8MWV9 139 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 M0R2P5 195 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 HERVK_113P61574 105 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 ZNF415Q09FC8 603 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 UFSP1Q6NVU6 142 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 PRADC1Q9BSG0 188 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 RAB37Q96AX2 223 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 RAX2Q96IS3 184 aa11.25□□□□□ -0.61
USH1C-207ENST00000527720 ITPR3Q14573 2671 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 A0A1W2PPM0 123 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 C11orf86A6NJI1 115 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 K7EP34 96 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 FHL3Q13643 280 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 EPG5Q9HCE0 2579 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 NACAE9PAV3 2078 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 CD300EQ496F6 205 aaPredicted RBP11.24□□□□□ -0.61
USH1C-207ENST00000527720 C20orf203Q8NBC4 194 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 HIST1H4GQ99525 98 aa11.24□□□□□ -0.61
USH1C-207ENST00000527720 MYO9AB2RTY4 2548 aa11.23□□□□□ -0.61
USH1C-207ENST00000527720 TRBV7-3A0A075B6L6 115 aa11.23□□□□□ -0.61
USH1C-207ENST00000527720 PHLDA1Q8WV24 401 aaPredicted RBP11.23□□□□□ -0.61
USH1C-207ENST00000527720 GAGE12BA1L429 117 aa11.23□□□□□ -0.61
USH1C-207ENST00000527720 INSP01308 110 aa11.23□□□□□ -0.61
USH1C-207ENST00000527720 P0DMU3 169 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 FAM231AP0DMU4 169 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 FAM231CP0DMU5 169 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 FABP2P12104 132 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 HTN1P15515 57 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 SAMD5Q5TGI4 173 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 OR5A1Q8NGJ0 315 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 SPXQ9BT56 116 aa11.22□□□□□ -0.61
USH1C-207ENST00000527720 NHP2Q9NX24 153 aaKnown RBP11.22□□□□□ -0.61
USH1C-207ENST00000527720 ZNF469Q96JG9 3925 aaPredicted RBP11.22□□□□□ -0.61
USH1C-207ENST00000527720 NFE4Q86UQ8 179 aa11.21□□□□□ -0.61
USH1C-207ENST00000527720 ZNF815PA8K554 130 aa11.21□□□□□ -0.62
USH1C-207ENST00000527720 RNASE8Q8TDE3 154 aaKnown RBP11.21□□□□□ -0.62
USH1C-207ENST00000527720 ESM1Q9NQ30 184 aa11.21□□□□□ -0.62
USH1C-207ENST00000527720 RHODO00212 210 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 SCGB2A2Q13296 93 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 DEFB104AQ8WTQ1 72 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 LINC01587Q99440 93 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 C11orf72Q8NBR9 251 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 SPCS1Q9Y6A9 102 aa11.2□□□□□ -0.62
USH1C-207ENST00000527720 CCL24O00175 119 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 NAA38Q9BRA0 125 aaKnown RBP11.19□□□□□ -0.62
USH1C-207ENST00000527720 PYGO1Q9Y3Y4 419 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 A0A1B0GWB2 263 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 C12orf74Q32Q52 190 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 BEAN1Q3B7T3 259 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 ZNRF2Q8NHG8 242 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 C16orf95Q9H693 158 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 TNFRSF18Q9Y5U5 241 aa11.19□□□□□ -0.62
USH1C-207ENST00000527720 AKAP9Q99996 3911 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 TLN2Q9Y4G6 2542 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 CRYBA4P53673 196 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 KRTAP1-1Q07627 177 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 ODF3L2Q3SX64 289 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 CFAP126Q5VTH2 177 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 SCGB1D4Q6XE38 83 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 K7ERJ3 54 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 EMP1P54849 157 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 TMEM170BQ5T4T1 132 aa11.18□□□□□ -0.62
USH1C-207ENST00000527720 TSSC4Q9Y5U2 329 aaPredicted RBP11.18□□□□□ -0.62
USH1C-207ENST00000527720 RNASE1P07998 156 aaKnown RBP11.17□□□□□ -0.62
USH1C-207ENST00000527720 CD28P10747 220 aa11.17□□□□□ -0.62
USH1C-207ENST00000527720 STHQ8IWL8 128 aa11.17□□□□□ -0.62
USH1C-207ENST00000527720 DNAJC30Q96LL9 226 aa11.17□□□□□ -0.62
USH1C-207ENST00000527720 IGLV4-3A0A075B6K6 122 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 IGHV3-73A0A0B4J1V6 119 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 A6NJY4 79 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 IGLL5B9A064 214 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 CMC4P56277 68 aaPredicted RBP11.16□□□□□ -0.62
USH1C-207ENST00000527720 OCIAD2Q56VL3 154 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 VCX2Q9H322 139 aa11.16□□□□□ -0.62
USH1C-207ENST00000527720 NBPF19A0A087WUL8 3843 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 RS1O15537 224 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 IGHV3-53P01767 116 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 PROK1P58294 105 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 RBX1P62877 108 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 YAE1D1Q9NRH1 226 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 FLNAP21333 2647 aaKnown RBP11.15□□□□□ -0.62
USH1C-207ENST00000527720 A0A1W2PRX2 142 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 PRM2P04554 102 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 HIST2H2BDQ6DRA6 164 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
USH1C-207ENST00000527720 SPANXB1Q9NS25 103 aaPredicted RBP11.15□□□□□ -0.62
USH1C-207ENST00000527720 HIST2H2BCQ6DN03 193 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 LINC01006Q8NI28 216 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 AMELXQ99217 191 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 OPRPNQ99935 248 aaPredicted RBP11.14□□□□□ -0.63
USH1C-207ENST00000527720 CITED2Q99967 270 aaPredicted RBP11.14□□□□□ -0.63
USH1C-207ENST00000527720 SONP18583 2426 aaKnown RBP11.14□□□□□ -0.63
USH1C-207ENST00000527720 A0A0J9YY99 117 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 TMEM223A0PJW6 202 aa11.14□□□□□ -0.63
USH1C-207ENST00000527720 PLA2G2AP14555 144 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms