RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ZNF493Q6ZR52 646 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 TMEM141Q96I45 108 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 IGHV4OR15-8A0A075B7B6 117 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 A0A087WW49 117 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 SPANXB1Q9NS25 103 aaPredicted RBP8.95□□□□□ -0.98
SYNPO-204ENST00000519664 LENEPQ9Y5L5 61 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 MDFICQ9P1T7 246 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 U3KQE9 123 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RBMY1BA6NDE4 496 aaKnown RBP8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RBMY1EA6NEQ0 496 aaKnown RBP8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RHODO00212 210 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RBMY1DP0C7P1 496 aaKnown RBP8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RBMY1A1P0DJD3 496 aaKnown RBP8.95□□□□□ -0.98
SYNPO-204ENST00000519664 RBMY1CP0DJD4 496 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 GAGE2AQ6NT46 116 aa8.95□□□□□ -0.98
SYNPO-204ENST00000519664 CRYGBP07316 175 aa8.94□□□□□ -0.98
SYNPO-204ENST00000519664 Q6ZUT4 128 aa8.94□□□□□ -0.98
SYNPO-204ENST00000519664 FREM2Q5SZK8 3169 aa8.94□□□□□ -0.98
SYNPO-204ENST00000519664 CLPSL2Q6UWE3 100 aa8.94□□□□□ -0.98
SYNPO-204ENST00000519664 OPRPNQ99935 248 aaPredicted RBP8.94□□□□□ -0.98
SYNPO-204ENST00000519664 PRO1854Q9UHT4 67 aa8.94□□□□□ -0.98
SYNPO-204ENST00000519664 NOP10Q9NPE3 64 aaKnown RBP8.94□□□□□ -0.98
SYNPO-204ENST00000519664 ODF3BA8MYP8 253 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 NXPH4O95158 308 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 CRPP02741 224 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 LGALS1P09382 135 aaKnown RBP8.93□□□□□ -0.98
SYNPO-204ENST00000519664 TMEM86BQ8N661 226 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 ANKRD17O75179 2603 aaKnown RBP8.93□□□□□ -0.98
SYNPO-204ENST00000519664 IGHG2P01859 326 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 C10orf99Q6UWK7 81 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 C9orf47Q6ZRZ4 202 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 NTN5Q8WTR8 489 aaPredicted RBP8.93□□□□□ -0.98
SYNPO-204ENST00000519664 EXPH5Q8NEV8 1989 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 ZFP2Q6ZN57 461 aa8.93□□□□□ -0.98
SYNPO-204ENST00000519664 LINC00310P59036 64 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 ODF1Q14990 250 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 Q8N976 141 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 H3BUA1 57 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 S100A7L2Q5SY68 101 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 SPATA25Q9BR10 227 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 LY6LH3BQJ8 138 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 MT-ATP8P03928 68 aa8.92□□□□□ -0.98
SYNPO-204ENST00000519664 J3QLI3 93 aa8.91□□□□□ -0.98
SYNPO-204ENST00000519664 MYCNOSP40205 109 aa8.91□□□□□ -0.98
SYNPO-204ENST00000519664 CCL24O00175 119 aa8.91□□□□□ -0.98
SYNPO-204ENST00000519664 TMEM61Q8N0U2 210 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 SMAD5-AS1Q9Y6J3 95 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 TET2Q6N021 2002 aaPredicted RBP8.9□□□□□ -0.98
SYNPO-204ENST00000519664 F5H768 121 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 IGLV2-11P01706 119 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 ESM1Q9NQ30 184 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 GAS8-AS1O95177 125 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 TRACP01848 142 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 CEMP1Q6PRD7 247 aaPredicted RBP8.9□□□□□ -0.98
SYNPO-204ENST00000519664 DAND5Q8N907 189 aa8.9□□□□□ -0.98
SYNPO-204ENST00000519664 E9PLD3 99 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 LEPROTO15243 131 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 Q6ZQT7 251 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 USP24Q9UPU5 2620 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 C11orf86A6NJI1 115 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 J3KT08 172 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 CMC4P56277 68 aaPredicted RBP8.89□□□□□ -0.99
SYNPO-204ENST00000519664 UFSP1Q6NVU6 142 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 TMEM243Q9BU79 118 aa8.89□□□□□ -0.99
SYNPO-204ENST00000519664 P0DMU3 169 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 FAM231AP0DMU4 169 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 FAM231CP0DMU5 169 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 Q6ZS46 218 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 C20orf173Q96LM9 149 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 A0A0J9YY99 117 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 IGLC6P0CF74 106 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 NDUFV3P56181 108 aaKnown RBP8.88□□□□□ -0.99
SYNPO-204ENST00000519664 DEFB113Q30KQ7 82 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 BAALCQ8WXS3 180 aa8.88□□□□□ -0.99
SYNPO-204ENST00000519664 ANKRD29Q8N6D5 301 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 A4D1N5 150 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 C5orf38Q86SI9 138 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 ZFAND3Q9H8U3 227 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 Q9H8V8 135 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 SPEGQ15772 3267 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 IGKV2D-26A0A0A0MRZ7 120 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 A6NDX4 124 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 DEFB121Q5J5C9 76 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 C2orf91Q6ZV80 131 aa8.87□□□□□ -0.99
SYNPO-204ENST00000519664 TRBV6-1A0A0K0K1D8 114 aa8.86□□□□□ -0.99
SYNPO-204ENST00000519664 GPHB5Q86YW7 130 aa8.86□□□□□ -0.99
SYNPO-204ENST00000519664 SS18Q15532 418 aa8.86□□□□□ -0.99
SYNPO-204ENST00000519664 C5orf47Q569G3 176 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 C11orf21Q9P2W6 132 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 DSPP15924 2871 aaKnown RBP8.85□□□□□ -0.99
SYNPO-204ENST00000519664 IGHG4P01861 327 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 CFC1BP0CG36 223 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 CFC1P0CG37 223 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 XCL1P47992 114 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 C11orf71Q6IPW1 123 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 PTH2Q96A98 100 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 ADAMTS20P59510 1910 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 A0A0J9YX75 114 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 DAD1P61803 113 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 HIST2H2BCQ6DN03 193 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms