RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 C1orf134Q5TEV5 83 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 SRSF12Q8WXF0 261 aaKnown RBP3.95□□□□□ -1.78
USP54-216ENST00000498143 TIMM21Q9BVV7 248 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 LAMA1P25391 3075 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 DOCK11Q5JSL3 2073 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 PRR32B1ATL7 298 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 ZNF826PQ6ZT77 177 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 CCL13Q99616 98 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 C4orf51C9J302 202 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 ZNF73O43830 326 aaPredicted RBP3.94□□□□□ -1.78
USP54-216ENST00000498143 TCL1BO95988 128 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 SS18Q15532 418 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 C2orf83Q53S99 150 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 CASC2Q6XLA1 102 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 WFDC9Q8NEX5 89 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 DMXL1Q9Y485 3027 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 IQCF6A8MYZ5 107 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 SLC25A48Q6ZT89 311 aaKnown RBP3.94□□□□□ -1.78
USP54-216ENST00000498143 PRNTQ86SH4 94 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 Q8IYB0 196 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 C11orf45Q8TAV5 145 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 C15orf61A6NNL5 157 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 TRBV12-3P01733 135 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 MRPL51Q4U2R6 128 aaKnown RBP3.94□□□□□ -1.78
USP54-216ENST00000498143 TMEM75Q8N9X5 138 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 SCRT1Q9BWW7 348 aa3.94□□□□□ -1.78
USP54-216ENST00000498143 KRTAP1-1Q07627 177 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 DIAPH2-AS1Q14236 149 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 RHOHQ15669 191 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 ZNF726P1Q15940 193 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 SOSTDC1Q6X4U4 206 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 A0A0A6YYD4 124 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 NDUFA3O95167 84 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRM2P04554 102 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 CFC1BP0CG36 223 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 CFC1P0CG37 223 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PROK1P58294 105 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 LMO4P61968 165 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PATE4P0C8F1 98 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 FXYD2P54710 66 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRR20EP86478 221 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRR20CP86479 221 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRR20DP86480 221 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRR20BP86481 221 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 PRR20AP86496 221 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 APCP25054 2843 aa3.93□□□□□ -1.78
USP54-216ENST00000498143 TGP01266 2768 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 IGKV1D-8A0A087WSZ0 117 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 IGKV3D-11A0A0A0MRZ8 115 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 NRACQ8N912 160 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 FAM30AQ9NZY2 134 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 V9GYV3 84 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 PLXNA2O75051 1894 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 PROP1O75360 226 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 MGPP08493 103 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 CFAP126Q5VTH2 177 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 UPK3BQ9BT76 320 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 EYSQ5T1H1 3165 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 ARID2Q68CP9 1835 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 XIRP2A4UGR9 3374 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 PRB3Q04118 309 aaPredicted RBP3.92□□□□□ -1.78
USP54-216ENST00000498143 C6orf99Q4VX62 202 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 MIR17HGQ75NE6 70 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 MED12LQ86YW9 2145 aa3.92□□□□□ -1.78
USP54-216ENST00000498143 TRBV25-1A0A075B6N4 114 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 IGKV3D-7A0A0C4DH55 119 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 INS-IGF2F8WCM5 200 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 CCL18P55774 89 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 LINC00311Q8N616 119 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 RASL10AQ92737 203 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 IGHV3OR16-12A0A075B7B8 117 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 A0A087WZ39 114 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 HAMPP81172 84 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 QRFPP83859 136 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 PIK3CD-AS1Q5SR53 167 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 PHLDA3Q9Y5J5 127 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 LINC00114Q6XXX2 140 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 TMEM133Q9H2Q1 129 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 IGKV1D-42A0A075B6H8 117 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 PRYO14603 147 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 LYPD3O95274 346 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 DEFA4P12838 97 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 SCN2AQ99250 2005 aa3.91□□□□□ -1.78
USP54-216ENST00000498143 IGKV3-7A0A075B6H7 116 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 TRBV7-6A0A0J9YX20 115 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 TRBV7-7A0A0K0K1E9 115 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 SMIM27A0A1W2PRY6 76 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 SAA1P0DJI8 122 aaPredicted RBP3.9□□□□□ -1.78
USP54-216ENST00000498143 ESRGQ1W209 222 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 C2orf48Q96LS8 159 aa3.9□□□□□ -1.78
USP54-216ENST00000498143 NYNRINQ9P2P1 1898 aaKnown RBP3.9□□□□□ -1.78
USP54-216ENST00000498143 IGHV3-11P01762 117 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 PLA2G1BP04054 148 aaKnown RBP3.9□□□□□ -1.79
USP54-216ENST00000498143 IFI6P09912 130 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 RBM12B-AS1Q9P1G2 102 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 IGHV1-46P01743 117 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 TFF1P04155 84 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 DYNAPQ8N1N2 210 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 KLF14Q8TD94 323 aaPredicted RBP3.9□□□□□ -1.79
USP54-216ENST00000498143 LINC00476Q8WZB0 136 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms