RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 C18orf15Q96N68 181 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 HIST1H2BLQ99880 126 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 SMIM2Q9BVW6 85 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 ST20Q9HBF5 79 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 AP5S1Q9NUS5 200 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 TRBV6-5A0A0K0K1A5 114 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 DEFB130BP0DP73 79 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 DEFB130AP0DP74 79 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 Q6ZSN1 163 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 Q8N8P6 123 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 NIT2Q9NQR4 276 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 DKK2Q9UBU2 259 aa15.41■□□□□ 0.06
SMC4-221ENST00000489573 IGLV2-18A0A075B6J9 118 aa15.4■□□□□ 0.06
SMC4-221ENST00000489573 FABP4P15090 132 aa15.4■□□□□ 0.06
SMC4-221ENST00000489573 SBSPONQ8IVN8 264 aa15.4■□□□□ 0.06
SMC4-221ENST00000489573 AMTP48728 403 aa15.39■□□□□ 0.05
SMC4-221ENST00000489573 RPL32P62910 135 aaKnown RBP15.38■□□□□ 0.05
SMC4-221ENST00000489573 FAM19A2Q8N3H0 131 aa15.38■□□□□ 0.05
SMC4-221ENST00000489573 LINC01546A6NGU7 62 aa15.37■□□□□ 0.05
SMC4-221ENST00000489573 SPART-AS1P0CW21 52 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 P0DMU3 169 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 FAM231AP0DMU4 169 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 FAM231CP0DMU5 169 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 PACRGQ96M98 296 aaPredicted RBP15.36■□□□□ 0.05
SMC4-221ENST00000489573 SPATA25Q9BR10 227 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 TMEM70Q9BUB7 260 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 MGAM2Q2M2H8 2515 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 IGHV1-24A0A0C4DH33 117 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 SDHAF1A6NFY7 115 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 AKR1D1P51857 326 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 POLR2KP53803 58 aaKnown RBP15.36■□□□□ 0.05
SMC4-221ENST00000489573 CELA1Q9UNI1 258 aa15.36■□□□□ 0.05
SMC4-221ENST00000489573 MEGF8Q7Z7M0 2845 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 TRGV4A0A0C4DH28 118 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 TEX48A0A1B0GUV7 120 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 K7EQD1 137 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 DAD1P61803 113 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 PMCHL1Q16048 86 aa15.35■□□□□ 0.05
SMC4-221ENST00000489573 VCYO14598 125 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 NEXN-AS1Q8NBZ9 246 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 MRAPQ8TCY5 172 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 DNAJC30Q96LL9 226 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 TM2D3Q9BRN9 247 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 C11orf68Q9H3H3 251 aaKnown RBP15.34■□□□□ 0.05
SMC4-221ENST00000489573 TNFRSF18Q9Y5U5 241 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 NOTCH1P46531 2555 aa15.34■□□□□ 0.05
SMC4-221ENST00000489573 FHL2Q14192 279 aa15.33■□□□□ 0.05
SMC4-221ENST00000489573 OR10D4PQ8NGN7 298 aa15.33■□□□□ 0.05
SMC4-221ENST00000489573 TRBV10-1A0A0K0K1A3 114 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 TRBV27A0A0K0K1C4 114 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 TCAPO15273 167 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 NEGR1Q7Z3B1 354 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 SLC25A29Q8N8R3 303 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 TRBV6-4A0A1B0GX49 114 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 K7EMI3 77 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 LAGE3Q14657 143 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 Q9UF83 564 aa15.32■□□□□ 0.04
SMC4-221ENST00000489573 KIR2DL4Q99706 377 aa15.31■□□□□ 0.04
SMC4-221ENST00000489573 HBDP02042 147 aa15.3■□□□□ 0.04
SMC4-221ENST00000489573 ORMDL2Q53FV1 153 aa15.3■□□□□ 0.04
SMC4-221ENST00000489573 A0A096LNJ9 63 aa15.29■□□□□ 0.04
SMC4-221ENST00000489573 RHOHQ15669 191 aa15.29■□□□□ 0.04
SMC4-221ENST00000489573 I3L3M4 83 aa15.28■□□□□ 0.04
SMC4-221ENST00000489573 FCER1GP30273 86 aa15.28■□□□□ 0.04
SMC4-221ENST00000489573 RPL36AP83881 106 aaKnown RBP15.28■□□□□ 0.04
SMC4-221ENST00000489573 RPL36ALQ969Q0 106 aaKnown RBP15.28■□□□□ 0.04
SMC4-221ENST00000489573 LEPROTL1O95214 131 aa15.28■□□□□ 0.04
SMC4-221ENST00000489573 ATP5G1P05496 136 aa15.28■□□□□ 0.04
SMC4-221ENST00000489573 PRADC1Q9BSG0 188 aa15.28■□□□□ 0.04
SMC4-221ENST00000489573 NBEAL2Q6ZNJ1 2754 aa15.27■□□□□ 0.04
SMC4-221ENST00000489573 TRBV7-3A0A075B6L6 115 aa15.27■□□□□ 0.03
SMC4-221ENST00000489573 NUDT3O95989 172 aa15.27■□□□□ 0.03
SMC4-221ENST00000489573 ZNRF2Q8NHG8 242 aa15.27■□□□□ 0.03
SMC4-221ENST00000489573 HHLA3Q9XRX5 114 aa15.27■□□□□ 0.03
SMC4-221ENST00000489573 A0A0J9YWU9 116 aa15.26■□□□□ 0.03
SMC4-221ENST00000489573 GAGE12JA6NER3 117 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 TSHBP01222 138 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 GAGE1Q13065 139 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 GAGE4Q13068 117 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 GAGE5Q13069 117 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 GAGE13Q4V321 117 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 ZMAT4Q9H898 229 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 PRO0255Q9UI72 69 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 HSPB8Q9UJY1 196 aa15.25■□□□□ 0.03
SMC4-221ENST00000489573 BTF3P20290 206 aaKnown RBP15.24■□□□□ 0.03
SMC4-221ENST00000489573 CRYBA4P53673 196 aa15.24■□□□□ 0.03
SMC4-221ENST00000489573 C12orf74Q32Q52 190 aa15.24■□□□□ 0.03
SMC4-221ENST00000489573 DEFB104AQ8WTQ1 72 aa15.24■□□□□ 0.03
SMC4-221ENST00000489573 PHLDA1Q8WV24 401 aaPredicted RBP15.24■□□□□ 0.03
SMC4-221ENST00000489573 LOC100131303A0A0U1RQF7 123 aa15.23■□□□□ 0.03
SMC4-221ENST00000489573 UBE2D3P61077 147 aa15.23■□□□□ 0.03
SMC4-221ENST00000489573 UBE2D2P62837 147 aa15.23■□□□□ 0.03
SMC4-221ENST00000489573 LINC00173Q6ZV60 143 aa15.23■□□□□ 0.03
SMC4-221ENST00000489573 B9D2Q9BPU9 175 aa15.23■□□□□ 0.03
SMC4-221ENST00000489573 DAZ4Q86SG3 579 aaKnown RBP15.22■□□□□ 0.03
SMC4-221ENST00000489573 DAZ3Q9NR90 486 aaKnown RBP15.22■□□□□ 0.03
SMC4-221ENST00000489573 IGHV3-38A0A0C4DH36 116 aa15.21■□□□□ 0.03
SMC4-221ENST00000489573 G0S2P27469 103 aa15.21■□□□□ 0.03
SMC4-221ENST00000489573 KRTDAPP60985 99 aa15.21■□□□□ 0.03
SMC4-221ENST00000489573 F5H768 121 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 1252.4 ms