RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 PRR26Q8N8Z3 221 aa5.69□□□□□ -1.5
COL17A1-207ENST00000488320 TRAV34A0A0B4J273 112 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 IGHV1-24A0A0C4DH33 117 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 TRBV6-1A0A0K0K1D8 114 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 GAGE12HA6NDE8 117 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 A6NHS1 94 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 SULT1A2P50226 295 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 LRRC37A5PQ49AS3 106 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 DNLZQ5SXM8 178 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 C15orf56Q8N910 161 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 C20orf203Q8NBC4 194 aa5.68□□□□□ -1.5
COL17A1-207ENST00000488320 ARL14EPLP0DKL9 152 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 RAB2AP61019 212 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 SMIM3Q9BZL3 60 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 GFRA4Q9GZZ7 299 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 PKIGQ9Y2B9 76 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 ARL2-SNX15V9GYD0 113 aa5.67□□□□□ -1.5
COL17A1-207ENST00000488320 IGLV4-60A0A075B6I1 120 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 IGKV3OR2-268A0A0C4DH90 116 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 SH2D1AO60880 128 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 MT-ND6P03923 174 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 CRIP1P50238 77 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 IQCJQ1A5X6 159 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 PRR27Q6MZM9 219 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 INO80EQ8NBZ0 244 aaPredicted RBP5.66□□□□□ -1.5
COL17A1-207ENST00000488320 AQP10Q96PS8 301 aa5.66□□□□□ -1.5
COL17A1-207ENST00000488320 RBM38Q9H0Z9 239 aaKnown RBP5.66□□□□□ -1.5
COL17A1-207ENST00000488320 A0A1B0GUV1 79 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 UBE2L6O14933 153 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 SIX6O95475 246 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 GCHFRP30047 84 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 CDC34P49427 236 aaPredicted RBP5.65□□□□□ -1.5
COL17A1-207ENST00000488320 SSTP61278 116 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 C1orf137Q5JT78 98 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 FAM162BQ5T6X4 162 aa5.65□□□□□ -1.5
COL17A1-207ENST00000488320 SCO2A0A1W2PP80 73 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 CCDC160A6NGH7 325 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 H0YIZ8 118 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 H2AFB2P0C5Z0 115 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 STAG3L2P0CL84 134 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 STAG3L3P0CL85 134 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 SMIM17P0DL12 118 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 FER1L6-AS1Q8NA97 138 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 SUN5Q8TC36 379 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 TMEM243Q9BU79 118 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 ZNF471Q9BX82 626 aaPredicted RBP5.64□□□□□ -1.51
COL17A1-207ENST00000488320 TMEM167BQ9NRX6 74 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 NUDT15Q9NV35 164 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 CRCT1Q9UGL9 99 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 HSPB11Q9Y547 144 aa5.64□□□□□ -1.51
COL17A1-207ENST00000488320 LYRM1O43325 122 aa5.63□□□□□ -1.51
COL17A1-207ENST00000488320 IL7P13232 177 aa5.63□□□□□ -1.51
COL17A1-207ENST00000488320 GAGE2BQ13066 116 aa5.63□□□□□ -1.51
COL17A1-207ENST00000488320 DIRC1Q969H9 104 aa5.63□□□□□ -1.51
COL17A1-207ENST00000488320 TRAV1-1A0A0B4J248 108 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 MUC21A0A140T8X8 626 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 CXorf1O96002 111 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 RPL12P30050 165 aaKnown RBP5.62□□□□□ -1.51
COL17A1-207ENST00000488320 UBE2D1P51668 147 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 DEFA3P59666 94 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 CYCSP99999 105 aaKnown RBP5.62□□□□□ -1.51
COL17A1-207ENST00000488320 SPANXN1Q5VSR9 72 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 Q86TA4 180 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 RAB24Q969Q5 203 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 SDHCQ99643 169 aaPredicted RBP5.62□□□□□ -1.51
COL17A1-207ENST00000488320 ZFP30Q9Y2G7 519 aa5.62□□□□□ -1.51
COL17A1-207ENST00000488320 IGLV1-50A0A075B6I6 118 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 GVQW2A0A096LPI5 108 aaPredicted RBP5.61□□□□□ -1.51
COL17A1-207ENST00000488320 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.61□□□□□ -1.51
COL17A1-207ENST00000488320 PEX7O00628 323 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 PLA2G10O15496 165 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 OR10AG1Q8NH19 301 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 CHCHD10Q8WYQ3 142 aaPredicted RBP5.61□□□□□ -1.51
COL17A1-207ENST00000488320 LINC00526Q96FQ7 95 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 CARD19Q96LW7 228 aa5.61□□□□□ -1.51
COL17A1-207ENST00000488320 A0A1W2PNN7 141 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 A0A1W2PRE2 83 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 AMTP48728 403 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 UBE2G2P60604 165 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 UBE2G1P62253 170 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 ZNF674Q2M3X9 581 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 WFDC1Q9HC57 220 aa5.6□□□□□ -1.51
COL17A1-207ENST00000488320 MUC17Q685J3 4493 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 FAM240BA0A1B0GVZ2 78 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 ZNF561-AS1K7EIQ3 104 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 TSPAN13O95857 204 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 IGLV7-43P04211 117 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 MGPP08493 103 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 NKX2-5P52952 324 aaPredicted RBP5.59□□□□□ -1.51
COL17A1-207ENST00000488320 PTTG1IPP53801 180 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 EIF5AP63241 154 aaKnown RBP5.59□□□□□ -1.51
COL17A1-207ENST00000488320 PPP1R1CQ8WVI7 109 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 HIST1H2BAQ96A08 127 aa5.59□□□□□ -1.51
COL17A1-207ENST00000488320 ACTR3CQ9C0K3 210 aaPredicted RBP5.59□□□□□ -1.51
COL17A1-207ENST00000488320 IGHV1-58A0A0C4DH39 117 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 LOC107984640A0A0U1RRK4 108 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 H0Y9J4 135 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 MBP02144 154 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 PET100P0DJ07 73 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 SYCNQ0VAF6 134 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms