RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 H3BVH4 76 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 J3QR89 54 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 PAX4O43316 350 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 GCSHP23434 173 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 HERVK_113P61574 105 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 SUMO2P61956 95 aaKnown RBP6.74□□□□□ -1.33
COL12A1-208ENST00000486533 FHL3Q13643 280 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 ZC2HC1BQ5TFG8 222 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 LYRM7Q5U5X0 104 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 OR11H2Q8NH07 326 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 TM2D2Q9BX73 214 aa6.74□□□□□ -1.33
COL12A1-208ENST00000486533 NBEAL2Q6ZNJ1 2754 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 IGHV3OR16-8A0A075B7F1 116 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 IGHV3-66A0A0C4DH42 116 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 APRG1Q8IVJ8 170 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 CEND1Q8N111 149 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 TOMM6Q96B49 74 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 SCGB3A1Q96QR1 104 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 B9D2Q9BPU9 175 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 TP73-AS1Q9UF72 201 aa6.73□□□□□ -1.33
COL12A1-208ENST00000486533 K7EMT4 169 aa6.72□□□□□ -1.33
COL12A1-208ENST00000486533 PCP2Q8IVA1 136 aa6.72□□□□□ -1.33
COL12A1-208ENST00000486533 ODF3Q96PU9 254 aa6.72□□□□□ -1.33
COL12A1-208ENST00000486533 HHLA3Q9XRX5 114 aa6.72□□□□□ -1.33
COL12A1-208ENST00000486533 CHTOPQ9Y3Y2 248 aaKnown RBP6.72□□□□□ -1.33
COL12A1-208ENST00000486533 SORL1Q92673 2214 aa6.72□□□□□ -1.33
COL12A1-208ENST00000486533 TRBV25-1A0A075B6N4 114 aa6.71□□□□□ -1.34
COL12A1-208ENST00000486533 FXYD7P58549 80 aa6.71□□□□□ -1.34
COL12A1-208ENST00000486533 WFDC3Q8IUB2 231 aa6.71□□□□□ -1.34
COL12A1-208ENST00000486533 MRPL35Q9NZE8 188 aaKnown RBP6.71□□□□□ -1.34
COL12A1-208ENST00000486533 C11orf21Q9P2W6 132 aa6.71□□□□□ -1.34
COL12A1-208ENST00000486533 NXPH4O95158 308 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 IGHV3-11P01762 117 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 INSL3P51460 131 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 SLURP1P55000 103 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 FAM159AQ6UWV7 190 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 GTSCR1Q86UQ5 136 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 ZNF575Q86XF7 245 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 ZFAND2AQ8N6M9 145 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 SYT8Q8NBV8 401 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 RAB37Q96AX2 223 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 TMEM141Q96I45 108 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 HIST1H4GQ99525 98 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 KRTAP9-9Q9BYP9 154 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 KRTAP9-4Q9BYQ2 154 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 DAZ1Q9NQZ3 744 aaKnown RBP6.7□□□□□ -1.34
COL12A1-208ENST00000486533 CYSLTR1Q9Y271 337 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 ZNF256Q9Y2P7 627 aaPredicted RBP6.7□□□□□ -1.34
COL12A1-208ENST00000486533 STAB2Q8WWQ8 2551 aa6.7□□□□□ -1.34
COL12A1-208ENST00000486533 IGHV3OR16-13A0A075B7E8 117 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 IGHV3-49A0A0A0MS15 119 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 IGHV3-74A0A0B4J1X5 117 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 SOCS3O14543 225 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 SAP30O75446 220 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 MGPP08493 103 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 LGALS1P09382 135 aaKnown RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 PRB4P10163 310 aaPredicted RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 RPL11P62913 178 aaKnown RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 TM4SF20Q53R12 229 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 POM121L12Q8N7R1 296 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 DLX4Q92988 240 aaPredicted RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 FAM19A4Q96LR4 140 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 IGHV4OR15-8A0A075B7B6 117 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 A0A087WW49 117 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 MYMXA0A1B0GTQ4 84 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 F8W1H4 67 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 GATA1P15976 413 aaPredicted RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 KIR2DL4Q99706 377 aa6.69□□□□□ -1.34
COL12A1-208ENST00000486533 NHP2Q9NX24 153 aaKnown RBP6.69□□□□□ -1.34
COL12A1-208ENST00000486533 KMT2CQ8NEZ4 4911 aaKnown RBP6.68□□□□□ -1.34
COL12A1-208ENST00000486533 DNAH9Q9NYC9 4486 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 E9PLD3 99 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 VCYO14598 125 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 EIF4EBP3O60516 100 aaPredicted RBP6.68□□□□□ -1.34
COL12A1-208ENST00000486533 NHLRC4P0CG21 123 aaPredicted RBP6.68□□□□□ -1.34
COL12A1-208ENST00000486533 RNASE4P34096 147 aaKnown RBP6.68□□□□□ -1.34
COL12A1-208ENST00000486533 ANXA2RQ3ZCQ2 193 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 C2orf66Q6UXQ4 117 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 NEGR1Q7Z3B1 354 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 NEXN-AS1Q8NBZ9 246 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 ZNF479Q96JC4 524 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 WWC2-AS2Q96NR7 200 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 RHPN1-AS1Q9BWJ2 59 aa6.68□□□□□ -1.34
COL12A1-208ENST00000486533 IGKV2D-26A0A0A0MRZ7 120 aa6.67□□□□□ -1.34
COL12A1-208ENST00000486533 TRAV26-2A0A0B4J265 109 aa6.67□□□□□ -1.34
COL12A1-208ENST00000486533 DUSP14O95147 198 aaKnown RBP6.67□□□□□ -1.34
COL12A1-208ENST00000486533 FXYD2P54710 66 aa6.67□□□□□ -1.34
COL12A1-208ENST00000486533 SNRPD3P62318 126 aaKnown RBP6.67□□□□□ -1.34
COL12A1-208ENST00000486533 RASL10AQ92737 203 aa6.67□□□□□ -1.34
COL12A1-208ENST00000486533 C20orf173Q96LM9 149 aa6.67□□□□□ -1.34
COL12A1-208ENST00000486533 KLLNB2CW77 178 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 TCTAP57738 103 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 RHOHQ15669 191 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 C21orf62-AS1Q17RA5 79 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 PRR9Q5T870 116 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 GPHB5Q86YW7 130 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 C14orf178Q8N769 122 aaPredicted RBP6.66□□□□□ -1.34
COL12A1-208ENST00000486533 TIMM17AQ99595 171 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 CSTL1Q9H114 145 aa6.66□□□□□ -1.34
COL12A1-208ENST00000486533 TRBV6-5A0A0K0K1A5 114 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms