RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 SETD2Q9BYW2 2564 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-206ENST00000470588 H7C1H1 209 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 BEAN1Q3B7T3 259 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 MORN3Q6PF18 240 aaPredicted RBP12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 ZFP2Q6ZN57 461 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 LINC00482Q8N8I6 264 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 CITED1Q99966 193 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 CYSLTR1Q9Y271 337 aa12.34□□□□□ -0.43
SMARCD3-206ENST00000470588 DLEU1O43261 78 aa12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 NEGR1Q7Z3B1 354 aa12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 C11orf72Q8NBR9 251 aa12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 XCL2Q9UBD3 114 aa12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 CYSRT1A8MQ03 144 aa12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 HINT1P49773 126 aaPredicted RBP12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 MRPL35Q9NZE8 188 aaKnown RBP12.33□□□□□ -0.44
SMARCD3-206ENST00000470588 WNK1Q9H4A3 2382 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 PRM2P04554 102 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 FGF6P10767 208 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 RIPPLY3P57055 190 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 BOD1L2Q8IYS8 172 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 C1orf158Q8N1D5 194 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 NEXN-AS1Q8NBZ9 246 aa12.32□□□□□ -0.44
SMARCD3-206ENST00000470588 PLNP26678 52 aa12.31□□□□□ -0.44
SMARCD3-206ENST00000470588 RHOHQ15669 191 aa12.31□□□□□ -0.44
SMARCD3-206ENST00000470588 UFSP1Q6NVU6 142 aa12.31□□□□□ -0.44
SMARCD3-206ENST00000470588 TMEM208Q9BTX3 173 aa12.31□□□□□ -0.44
SMARCD3-206ENST00000470588 SIVA1O15304 175 aa12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 C12orf54Q6X4T0 127 aa12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 TMEM141Q96I45 108 aa12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 F8VRH5 84 aa12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 BAALCQ8WXS3 180 aa12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 CHTOPQ9Y3Y2 248 aaKnown RBP12.3□□□□□ -0.44
SMARCD3-206ENST00000470588 I3L3M4 83 aa12.29□□□□□ -0.44
SMARCD3-206ENST00000470588 RHODO00212 210 aa12.29□□□□□ -0.44
SMARCD3-206ENST00000470588 INSL3P51460 131 aa12.29□□□□□ -0.44
SMARCD3-206ENST00000470588 C19orf73Q9NVV2 129 aa12.29□□□□□ -0.44
SMARCD3-206ENST00000470588 TP73-AS1Q9UF72 201 aa12.29□□□□□ -0.44
SMARCD3-206ENST00000470588 IGIPA6NJ69 53 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 RS1O15537 224 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 C9orf66Q5T8R8 295 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 CFAP126Q5VTH2 177 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 C2orf91Q6ZV80 131 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 TP53TG1Q9Y2A0 90 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 AZU1P20160 251 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 NMUP48645 174 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 MPV17L2Q567V2 206 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 ZC2HC1BQ5TFG8 222 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 TIMM17AQ99595 171 aa12.28□□□□□ -0.44
SMARCD3-206ENST00000470588 PRSS29PA6NIE9 313 aa12.27□□□□□ -0.45
SMARCD3-206ENST00000470588 GTSCR1Q86UQ5 136 aa12.27□□□□□ -0.45
SMARCD3-206ENST00000470588 IGHV3-73A0A0B4J1V6 119 aa12.26□□□□□ -0.45
SMARCD3-206ENST00000470588 TSHBP01222 138 aa12.26□□□□□ -0.45
SMARCD3-206ENST00000470588 KRTAP24-1Q3LI83 254 aa12.26□□□□□ -0.45
SMARCD3-206ENST00000470588 TNFRSF18Q9Y5U5 241 aa12.26□□□□□ -0.45
SMARCD3-206ENST00000470588 BVES-AS1Q5T3Y7 98 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 IL17DQ8TAD2 202 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 DNAJC30Q96LL9 226 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 MRPL16Q9NX20 251 aaKnown RBP12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 IGHV3OR16-12A0A075B7B8 117 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 PCP2Q8IVA1 136 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 C1QTNF4Q9BXJ3 329 aa12.25□□□□□ -0.45
SMARCD3-206ENST00000470588 IGKV2D-26A0A0A0MRZ7 120 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 IGHV3-53P01767 116 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 GIG44P09565 113 aaPredicted RBP12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 P0DMU3 169 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 FAM231AP0DMU4 169 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 FAM231CP0DMU5 169 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 TCTAP57738 103 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 RPL39P62891 51 aaKnown RBP12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 PMVKQ15126 192 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 PAPPA-AS1Q5QFB9 102 aa12.24□□□□□ -0.45
SMARCD3-206ENST00000470588 TMEM97Q5BJF2 176 aa12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 C20orf203Q8NBC4 194 aa12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 RNASE8Q8TDE3 154 aaKnown RBP12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 TMEM263Q8WUH6 116 aaKnown RBP12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 Q6ZSN1 163 aa12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 DEFB104AQ8WTQ1 72 aa12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 CST9LQ9H4G1 147 aa12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 ZMAT5Q9UDW3 170 aaKnown RBP12.23□□□□□ -0.45
SMARCD3-206ENST00000470588 RPL35AP18077 110 aaKnown RBP12.22□□□□□ -0.45
SMARCD3-206ENST00000470588 C3orf56Q8N813 242 aa12.22□□□□□ -0.45
SMARCD3-206ENST00000470588 WFDC10AQ9H1F0 79 aa12.21□□□□□ -0.45
SMARCD3-206ENST00000470588 HIGD1BQ9P298 99 aa12.21□□□□□ -0.45
SMARCD3-206ENST00000470588 HSD52Q0P140 79 aa12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 DAZ2Q13117 558 aaKnown RBP12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 OR4C5Q8NGB2 326 aa12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 TRGV1A0A0A0MS02 117 aa12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 ZNF25P17030 456 aaPredicted RBP12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 CSNK1G2-AS1Q8NCQ2 148 aa12.2□□□□□ -0.46
SMARCD3-206ENST00000470588 JMJD1CQ15652 2540 aa12.19□□□□□ -0.46
SMARCD3-206ENST00000470588 SHISA2Q6UWI4 295 aa12.19□□□□□ -0.46
SMARCD3-206ENST00000470588 C16orf74Q96GX8 76 aa12.19□□□□□ -0.46
SMARCD3-206ENST00000470588 NIPBLQ6KC79 2804 aaeCLIP12.19□□□□□ -0.46
SMARCD3-206ENST00000470588 SEC11AP67812 179 aa12.18□□□□□ -0.46
SMARCD3-206ENST00000470588 PYGO1Q9Y3Y4 419 aa12.18□□□□□ -0.46
SMARCD3-206ENST00000470588 NACAE9PAV3 2078 aa12.18□□□□□ -0.46
SMARCD3-206ENST00000470588 TEP1Q99973 2627 aaKnown RBP12.18□□□□□ -0.46
SMARCD3-206ENST00000470588 ORAOV1Q8WV07 137 aa12.18□□□□□ -0.46
SMARCD3-206ENST00000470588 IGLV4-69A0A075B6H9 119 aa12.17□□□□□ -0.46
SMARCD3-206ENST00000470588 TRAV4A0A0B4J268 109 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms