RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 UFSP1Q6NVU6 142 aa8.46□□□□□ -1.06
USP54-209ENST00000464635 C18orf15Q96N68 181 aa8.46□□□□□ -1.06
USP54-209ENST00000464635 HSPB8Q9UJY1 196 aa8.46□□□□□ -1.06
USP54-209ENST00000464635 TIMM8BQ9Y5J9 83 aaPredicted RBP8.46□□□□□ -1.06
USP54-209ENST00000464635 RS1O15537 224 aa8.45□□□□□ -1.06
USP54-209ENST00000464635 SUMO2P61956 95 aaKnown RBP8.45□□□□□ -1.06
USP54-209ENST00000464635 RRN3P1Q2M238 152 aa8.45□□□□□ -1.06
USP54-209ENST00000464635 PYY3Q5JQD4 70 aa8.45□□□□□ -1.06
USP54-209ENST00000464635 RNASEKQ6P5S7 137 aaKnown RBP8.45□□□□□ -1.06
USP54-209ENST00000464635 SPATA12Q7Z6I5 190 aa8.45□□□□□ -1.06
USP54-209ENST00000464635 ALMS1Q8TCU4 4167 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 M0QY20 66 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 LEPROTL1O95214 131 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 FCER1GP30273 86 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 POLR2KP53803 58 aaKnown RBP8.44□□□□□ -1.06
USP54-209ENST00000464635 ORMDL2Q53FV1 153 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 DNAJC30Q96LL9 226 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 SMIM2Q9BVW6 85 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 NIT2Q9NQR4 276 aa8.44□□□□□ -1.06
USP54-209ENST00000464635 IGHV1-24A0A0C4DH33 117 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 TRBV27A0A0K0K1C4 114 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 VCYO14598 125 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 HBDP02042 147 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 RPL35AP18077 110 aaKnown RBP8.43□□□□□ -1.06
USP54-209ENST00000464635 Q6ZWC4 215 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 C12orf57Q99622 126 aa8.43□□□□□ -1.06
USP54-209ENST00000464635 SMKR1H3BMG3 65 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 IGHV3-53P01767 116 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 HTN1P15515 57 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 AZU1P20160 251 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 BTF3P20290 206 aaKnown RBP8.42□□□□□ -1.06
USP54-209ENST00000464635 LAGE3Q14657 143 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 DEFB135Q30KP9 77 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 CFAP126Q5VTH2 177 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 SUMO4Q6EEV6 95 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 ST20Q9HBF5 79 aa8.42□□□□□ -1.06
USP54-209ENST00000464635 TRAV4A0A0B4J268 109 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 TRBV10-1A0A0K0K1A3 114 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 PLAC8L1A1L4L8 177 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 NCR2O95944 276 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 MGPP08493 103 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 PMCHL1Q16048 86 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 PET117Q6UWS5 81 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 FAM19A2Q8N3H0 131 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 LINC00612Q8N6U2 182 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 TMEM70Q9BUB7 260 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 JPT2Q9H910 190 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 NACAE9PAV3 2078 aa8.41□□□□□ -1.06
USP54-209ENST00000464635 A0A087WWL8 130 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 A0A096LNJ9 63 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 A0A0J9YWU9 116 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 LOC389332A0A1B0GUA5 103 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 F5H697 171 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 GAS8-AS1O95177 125 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 C3orf79P0CE67 100 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 GATA1P15976 413 aaPredicted RBP8.4□□□□□ -1.06
USP54-209ENST00000464635 KIR2DL4Q99706 377 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 MAP1LC3CQ9BXW4 147 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 TP53TG1Q9Y2A0 90 aa8.4□□□□□ -1.06
USP54-209ENST00000464635 TRAV26-2A0A0B4J265 109 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 LYRM9A8MSI8 78 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 ATP5LO75964 103 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 MIFP14174 115 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 S100A12P80511 92 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 RHOHQ15669 191 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 ZNF56Q15929 161 aa8.39□□□□□ -1.07
USP54-209ENST00000464635 BIRC6Q9NR09 4857 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 IGHV3OR16-12A0A075B7B8 117 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 SDHAF1A6NFY7 115 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 NPSP0C0P6 89 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 FAM74A4Q5TZK3 123 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 TEX43Q6ZNM6 134 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 OR4C5Q8NGB2 326 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 RNF183Q96D59 192 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 X6R8D5 127 aa8.38□□□□□ -1.07
USP54-209ENST00000464635 TEX48A0A1B0GUV7 120 aa8.37□□□□□ -1.07
USP54-209ENST00000464635 C20orf202A1L168 122 aa8.37□□□□□ -1.07
USP54-209ENST00000464635 SYS1-DBNDD2H3BUS1 97 aa8.37□□□□□ -1.07
USP54-209ENST00000464635 SCGB1D1O95968 90 aa8.37□□□□□ -1.07
USP54-209ENST00000464635 TOMM6Q96B49 74 aa8.37□□□□□ -1.07
USP54-209ENST00000464635 RPL39LQ96EH5 51 aaKnown RBP8.37□□□□□ -1.07
USP54-209ENST00000464635 TRGV1A0A0A0MS02 117 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 TRBV6-4A0A1B0GX49 114 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 I3L3M4 83 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 PRM2P04554 102 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 LINC01545Q5VT33 79 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 LGALS9CQ6DKI2 356 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 Q8N976 141 aa8.36□□□□□ -1.07
USP54-209ENST00000464635 NOP10Q9NPE3 64 aaKnown RBP8.36□□□□□ -1.07
USP54-209ENST00000464635 MRPL16Q9NX20 251 aaKnown RBP8.36□□□□□ -1.07
USP54-209ENST00000464635 KRTDAPP60985 99 aa8.35□□□□□ -1.07
USP54-209ENST00000464635 LINC00476Q8WZB0 136 aa8.35□□□□□ -1.07
USP54-209ENST00000464635 IFI27L1Q96BM0 104 aa8.35□□□□□ -1.07
USP54-209ENST00000464635 TNFRSF18Q9Y5U5 241 aa8.35□□□□□ -1.07
USP54-209ENST00000464635 NUDT3O95989 172 aa8.34□□□□□ -1.07
USP54-209ENST00000464635 CRYBA4P53673 196 aa8.34□□□□□ -1.07
USP54-209ENST00000464635 Q6ZTI0 123 aa8.34□□□□□ -1.07
USP54-209ENST00000464635 ERASQ7Z444 233 aa8.34□□□□□ -1.07
USP54-209ENST00000464635 TRBV7-3A0A075B6L6 115 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 TRAV12-1A0A0B4J245 112 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms